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Vision, challenges and opportunities for a Plant Cell Atlas.
Plant Cell Atlas Consortium; Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, Briggs SP, Brophy JA, Denolf P, Di Costanzo LF, Exposito-Alonso M, Giacomello S, Gomez-Cano F, Kaufmann K, Ko DK, Kumar S, Malkovskiy AV, Nakayama N, Obata T, Otegui MS, Palfalvi G, Quezada-Rodríguez EH, Singh R, Uhrig RG, Waese J, Van Wijk K, Wright RC, Ehrhardt DW, Birnbaum KD, Rhee SY. Plant Cell Atlas Consortium, et al. Among authors: cole bj. Elife. 2021 Sep 7;10:e66877. doi: 10.7554/eLife.66877. Elife. 2021. PMID: 34491200 Free PMC article.
Plant single-cell solutions for energy and the environment.
Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, Sinha N, Vogel JP, O'Malley RC, Visel A, Dickel DE. Cole B, et al. Commun Biol. 2021 Aug 12;4(1):962. doi: 10.1038/s42003-021-02477-4. Commun Biol. 2021. PMID: 34385583 Free PMC article. Review.
First Plant Cell Atlas symposium report.
Rice SL, Lazarus E, Anderton C, Birnbaum K, Brophy J, Cole B, Dickel D, Ehrhardt D, Fahlgren N, Frank M, Haswell E, Huang SC, Leiboff S, Libault M, Otegui MS, Provart N, Uhrig RG, Rhee SY; Plant Cell Atlas Consortium. Rice SL, et al. Plant Direct. 2022 Jun 8;6(6):e406. doi: 10.1002/pld3.406. eCollection 2022 Jun. Plant Direct. 2022. PMID: 35774620 Free PMC article.
Toward a data infrastructure for the Plant Cell Atlas.
Fahlgren N, Kapoor M, Yordanova G, Papatheodorou I, Waese J, Cole B, Harrison P, Ware D, Tickle T, Paten B, Burdett T, Elsik CG, Tuggle CK, Provart NJ. Fahlgren N, et al. Plant Physiol. 2023 Jan 2;191(1):35-46. doi: 10.1093/plphys/kiac468. Plant Physiol. 2023. PMID: 36200899 Free PMC article. Review.
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics.
Grones C, Eekhout T, Shi D, Neumann M, Berg LS, Ke Y, Shahan R, Cox KL Jr, Gomez-Cano F, Nelissen H, Lohmann JU, Giacomello S, Martin OC, Cole B, Wang JW, Kaufmann K, Raissig MT, Palfalvi G, Greb T, Libault M, De Rybel B. Grones C, et al. Plant Cell. 2024 Mar 29;36(4):812-828. doi: 10.1093/plcell/koae003. Plant Cell. 2024. PMID: 38231860 Free PMC article.
High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.
Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. Shulse CN, et al. Among authors: cole bj. Cell Rep. 2019 May 14;27(7):2241-2247.e4. doi: 10.1016/j.celrep.2019.04.054. Cell Rep. 2019. PMID: 31091459 Free PMC article.
766 results