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RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats.
Mob DNA. 2024 Apr 3;15(1):6. doi: 10.1186/s13100-024-00315-y.
Mob DNA. 2024.
PMID: 38570859
Free PMC article.
Refined read-out: The hUHRF1 Tandem-Tudor domain prefers binding to histone H3 tails containing K4me1 in the context of H3K9me2/3.
Choudalakis M, Kungulovski G, Mauser R, Bashtrykov P, Jeltsch A.
Choudalakis M, et al.
Protein Sci. 2023 Sep;32(9):e4760. doi: 10.1002/pro.4760.
Protein Sci. 2023.
PMID: 37593997
Free PMC article.
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Mechanistic basis of the increased methylation activity of the SETD2 protein lysine methyltransferase towards a designed super-substrate peptide.
Schnee P, Choudalakis M, Weirich S, Khella MS, Carvalho H, Pleiss J, Jeltsch A.
Schnee P, et al. Among authors: choudalakis m.
Commun Chem. 2022 Oct 28;5(1):139. doi: 10.1038/s42004-022-00753-w.
Commun Chem. 2022.
PMID: 36697904
Free PMC article.
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The MECP2-TRD domain interacts with the DNMT3A-ADD domain at the H3-tail binding site.
Kunert S, Linhard V, Weirich S, Choudalakis M, Osswald F, Krämer L, Köhler AR, Bröhm A, Wollenhaupt J, Schwalbe H, Jeltsch A.
Kunert S, et al. Among authors: choudalakis m.
Protein Sci. 2023 Jan;32(1):e4542. doi: 10.1002/pro.4542.
Protein Sci. 2023.
PMID: 36519786
Free PMC article.
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A functional LSD1 coregulator screen reveals a novel transcriptional regulatory cascade connecting R-loop homeostasis with epigenetic regulation.
Pinter S, Knodel F, Choudalakis M, Schnee P, Kroll C, Fuchs M, Broehm A, Weirich S, Roth M, Eisler SA, Zuber J, Jeltsch A, Rathert P.
Pinter S, et al. Among authors: choudalakis m.
Nucleic Acids Res. 2021 May 7;49(8):4350-4370. doi: 10.1093/nar/gkab180.
Nucleic Acids Res. 2021.
PMID: 33823549
Free PMC article.
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H3K36me2/3 Binding and DNA Binding of the DNA Methyltransferase DNMT3A PWWP Domain Both Contribute to its Chromatin Interaction.
Dukatz M, Holzer K, Choudalakis M, Emperle M, Lungu C, Bashtrykov P, Jeltsch A.
Dukatz M, et al. Among authors: choudalakis m.
J Mol Biol. 2019 Dec 6;431(24):5063-5074. doi: 10.1016/j.jmb.2019.09.006. Epub 2019 Oct 18.
J Mol Biol. 2019.
PMID: 31634469
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