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Metrics reloaded: recommendations for image analysis validation.
Maier-Hein L, Reinke A, Godau P, Tizabi MD, Buettner F, Christodoulou E, Glocker B, Isensee F, Kleesiek J, Kozubek M, Reyes M, Riegler MA, Wiesenfarth M, Kavur AE, Sudre CH, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Rädsch T, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Blaschko MB, Cardoso MJ, Cheplygina V, Cimini BA, Collins GS, Farahani K, Ferrer L, Galdran A, van Ginneken B, Haase R, Hashimoto DA, Hoffman MM, Huisman M, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Karthikesalingam A, Kofler F, Kopp-Schneider A, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Mattson P, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rajpoot N, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, van Smeden M, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Van Calster B, Varoquaux G, Jäger PF. Maier-Hein L, et al. Among authors: cheplygina v. Nat Methods. 2024 Feb;21(2):195-212. doi: 10.1038/s41592-023-02151-z. Epub 2024 Feb 12. Nat Methods. 2024. PMID: 38347141 Free article. Review.
Understanding metric-related pitfalls in image analysis validation.
Reinke A, Tizabi MD, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Kavur AE, Rädsch T, Sudre CH, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Buettner F, Cardoso MJ, Cheplygina V, Chen J, Christodoulou E, Cimini BA, Farahani K, Ferrer L, Galdran A, van Ginneken B, Glocker B, Godau P, Hashimoto DA, Hoffman MM, Huisman M, Isensee F, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Kleesiek J, Kofler F, Kooi T, Kopp-Schneider A, Kozubek M, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rafelski SM, Rajpoot N, Reyes M, Riegler MA, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Van Calster B, Varoquaux G, Yaniv ZR, Jäger PF, Maier-Hein L. Reinke A, et al. Among authors: cheplygina v. Nat Methods. 2024 Feb;21(2):182-194. doi: 10.1038/s41592-023-02150-0. Epub 2024 Feb 12. Nat Methods. 2024. PMID: 38347140 Review.
Understanding metric-related pitfalls in image analysis validation.
Reinke A, Tizabi MD, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Kavur AE, Rädsch T, Sudre CH, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Blaschko M, Buettner F, Cardoso MJ, Cheplygina V, Chen J, Christodoulou E, Cimini BA, Collins GS, Farahani K, Ferrer L, Galdran A, van Ginneken B, Glocker B, Godau P, Haase R, Hashimoto DA, Hoffman MM, Huisman M, Isensee F, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Karthikesalingam A, Kenngott H, Kleesiek J, Kofler F, Kooi T, Kopp-Schneider A, Kozubek M, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Mattson P, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rafelski SM, Rajpoot N, Reyes M, Riegler MA, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, van Smeden M, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Calster BV, Varoquaux G, Wiesenfarth M, Yaniv ZR, Jäger PF, Maier-Hein L. Reinke A, et al. Among authors: cheplygina v. ArXiv [Preprint]. 2024 Feb 23:arXiv:2302.01790v4. ArXiv. 2024. PMID: 36945687 Free PMC article. Updated. Preprint.
Ten simple rules for failing successfully in academia.
Gaillard S, van Viegen T, Veldsman M, Stefan MI, Cheplygina V. Gaillard S, et al. Among authors: cheplygina v. PLoS Comput Biol. 2022 Dec 15;18(12):e1010538. doi: 10.1371/journal.pcbi.1010538. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520776 Free PMC article.
Effective Self-Management for Early Career Researchers in the Natural and Life Sciences.
Bielczyk NZ, Ando A, Badhwar A, Caldinelli C, Gao M, Haugg A, Hernandez LM, Ito KL, Kessler D, Lurie D, Makary MM, Nikolaidis A, Veldsman M, Allen C, Bankston A, Bottenhorn KL, Braukmann R, Calhoun V, Cheplygina V, Boffino CC, Ercan E, Finc K, Foo H, Khatibi A, La C, Mehler DMA, Narayanan S, Poldrack RA, Raamana PR, Salo T, Godard-Sebillotte C, Uddin LQ, Valeriani D, Valk SL, Walton CC, Ward PGD, Yanes JA, Zhou X; OHBM Student and Postdoc Special Interest Group. Bielczyk NZ, et al. Among authors: cheplygina v. Neuron. 2020 Apr 22;106(2):212-217. doi: 10.1016/j.neuron.2020.03.015. Neuron. 2020. PMID: 32325057 Free PMC article.
Ten simple rules for getting started on Twitter as a scientist.
Cheplygina V, Hermans F, Albers C, Bielczyk N, Smeets I. Cheplygina V, et al. PLoS Comput Biol. 2020 Feb 10;16(2):e1007513. doi: 10.1371/journal.pcbi.1007513. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32040507 Free PMC article. No abstract available.
Correction: Automatic emphysema detection using weakly labeled HRCT lung images.
Pino Peña I, Cheplygina V, Paschaloudi S, Vuust M, Carl J, Weinreich UM, Østergaard LR, de Bruijne M. Pino Peña I, et al. Among authors: cheplygina v. PLoS One. 2019 Aug 1;14(8):e0220873. doi: 10.1371/journal.pone.0220873. eCollection 2019. PLoS One. 2019. PMID: 31369647 Free PMC article.
13 results