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A graph-based genome and pan-genome variation of the model plant Setaria.
He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X. He Q, et al. Among authors: chen j. Nat Genet. 2023 Jul;55(7):1232-1242. doi: 10.1038/s41588-023-01423-w. Epub 2023 Jun 8. Nat Genet. 2023. PMID: 37291196 Free PMC article.
Population genetics of foxtail millet and its wild ancestor.
Wang C, Chen J, Zhi H, Yang L, Li W, Wang Y, Li H, Zhao B, Chen M, Diao X. Wang C, et al. Among authors: chen j, chen m. BMC Genet. 2010 Oct 11;11:90. doi: 10.1186/1471-2156-11-90. BMC Genet. 2010. PMID: 20937104 Free PMC article.
Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet.
Chen J, Liu Y, Liu M, Guo W, Wang Y, He Q, Chen W, Liao Y, Zhang W, Gao Y, Dong K, Ren R, Yang T, Zhang L, Qi M, Li Z, Zhao M, Wang H, Wang J, Qiao Z, Li H, Jiang Y, Liu G, Song X, Deng Y, Li H, Yan F, Dong Y, Li Q, Li T, Yang W, Cui J, Wang H, Zhou Y, Zhang X, Jia G, Lu P, Zhi H, Tang S, Diao X. Chen J, et al. Among authors: chen w. Nat Genet. 2023 Dec;55(12):2243-2254. doi: 10.1038/s41588-023-01571-z. Epub 2023 Nov 30. Nat Genet. 2023. PMID: 38036791 Free PMC article.
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.
Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, Yang L, Song C, Wang M, Shi J, Liu G, Liu J, Zhou H, Zhou W, Yu Q, An N, Chen Y, Cai Q, Wang B, Liu B, Min J, Huang Y, Wu H, Li Z, Zhang Y, Yin Y, Song W, Jiang J, Jackson SA, Wing RA, Wang J, Chen M. Chen J, et al. Among authors: chen m, chen c, chen y. Nat Commun. 2013;4:1595. doi: 10.1038/ncomms2596. Nat Commun. 2013. PMID: 23481403 Free PMC article.
Serial single-cell genomics reveals convergent subclonal evolution of resistance as early-stage breast cancer patients progress on endocrine plus CDK4/6 therapy.
Griffiths JI, Chen J, Cosgrove PA, O'Dea A, Sharma P, Ma C, Trivedi M, Kalinsky K, Wisinski KB, O'Regan R, Makhoul I, Spring LM, Bardia A, Adler FR, Cohen AL, Chang JT, Khan QJ, Bild AH. Griffiths JI, et al. Among authors: chen j. Nat Cancer. 2021 Jun;2(6):658-671. doi: 10.1038/s43018-021-00215-7. Epub 2021 Jun 3. Nat Cancer. 2021. PMID: 34712959 Free PMC article.
A snapshot of the Chinese SOL Project.
Li C, Zhao J, Jiang H, Geng Y, Dai Y, Fan H, Zhang D, Chen J, Lu F, Shi J, Sun S, Chen J, Yang X, Lu C, Chen M, Cheng Z, Ling H, Wang Y, Xue Y, Li C. Li C, et al. Among authors: chen j, chen m. J Genet Genomics. 2008 Jul;35(7):387-90. doi: 10.1016/S1673-8527(08)60056-9. J Genet Genomics. 2008. PMID: 18640618
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.
Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Lu F, et al. Among authors: chen j, chen m. Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):2071-6. doi: 10.1073/pnas.0812798106. Epub 2009 Jan 22. Proc Natl Acad Sci U S A. 2009. PMID: 19164767 Free PMC article.
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