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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.
Piatkowski BT, Carper DL, Carrell AA, Chen IA, Clum A, Daum C, Eloe-Fadrosh EA, Gilbert D, Granath G, Huntemann M, Jawdy SS, Klarenberg IJ, Kostka JE, Kyrpides NC, Lawrence TJ, Mukherjee S, Nilsson MB, Palaniappan K, Pelletier DA, Pennacchio C, Reddy TBK, Roux S, Shaw AJ, Warshan D, Živković T, Weston DJ. Piatkowski BT, et al. Among authors: chen ia. Microbiol Resour Announc. 2022 Oct 20;11(10):e0040022. doi: 10.1128/mra.00400-22. Epub 2022 Sep 7. Microbiol Resour Announc. 2022. PMID: 36069554 Free PMC article.
IMG/M: integrated genome and metagenome comparative data analysis system.
Chen IA, Markowitz VM, Chu K, Palaniappan K, Szeto E, Pillay M, Ratner A, Huang J, Andersen E, Huntemann M, Varghese N, Hadjithomas M, Tennessen K, Nielsen T, Ivanova NN, Kyrpides NC. Chen IA, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D507-D516. doi: 10.1093/nar/gkw929. Epub 2016 Oct 13. Nucleic Acids Res. 2017. PMID: 27738135 Free PMC article.
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.
Hadjithomas M, Chen IA, Chu K, Huang J, Ratner A, Palaniappan K, Andersen E, Markowitz V, Kyrpides NC, Ivanova NN. Hadjithomas M, et al. Among authors: chen ia. Nucleic Acids Res. 2017 Jan 4;45(D1):D560-D565. doi: 10.1093/nar/gkw1103. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27903896 Free PMC article.
Genomes OnLine database (GOLD) v.7: updates and new features.
Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Katta HY, Mojica A, Chen IA, Kyrpides NC, Reddy T. Mukherjee S, et al. Among authors: chen ia. Nucleic Acids Res. 2019 Jan 8;47(D1):D649-D659. doi: 10.1093/nar/gky977. Nucleic Acids Res. 2019. PMID: 30357420 Free PMC article.
Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.
Vasilenko OV, Starodumova IP, Dorofeeva LV, Tarlachkov SV, Prisyazhnaya NV, Chizhov VN, Subbotin SA, Huntemann M, Clum A, Duffy K, Pillay M, Palaniappan K, Varghese N, Chen IA, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Whitman WB, Evtushenko LI. Vasilenko OV, et al. Among authors: chen ia. Microbiol Resour Announc. 2018 Sep 20;7(11):e01051-18. doi: 10.1128/MRA.01051-18. eCollection 2018 Sep. Microbiol Resour Announc. 2018. PMID: 30533634 Free PMC article.
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Nowinski B, Smith CB, Thomas CM, Esson K, Marin R 3rd, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Whitman WB, Kiene RP, Eloe-Fadrosh EA, Moran MA. Nowinski B, et al. Among authors: chen ia. Sci Data. 2019 Jul 22;6(1):129. doi: 10.1038/s41597-019-0132-4. Sci Data. 2019. PMID: 31332186 Free PMC article.
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Camargo AP, de Souza RSC, de Britto Costa P, Gerhardt IR, Dante RA, Teodoro GS, Abrahão A, Lambers H, Carazzolle MF, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Arruda P, Oliveira RS. Camargo AP, et al. Among authors: chen ia. Sci Data. 2019 Jul 31;6(1):140. doi: 10.1038/s41597-019-0141-3. Sci Data. 2019. PMID: 31366912 Free PMC article.
157 results