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Joint profiling of gene expression and chromatin accessibility during amphioxus development at single-cell resolution.
Ma P, Liu X, Xu Z, Liu H, Ding X, Huang Z, Shi C, Liang L, Xu L, Li X, Li G, He Y, Ding Z, Chai C, Wang H, Qiu J, Zhu J, Wang X, Ding P, Zhou S, Yuan Y, Wu W, Wan C, Yan Y, Zhou Y, Zhou QJ, Wang GD, Zhang Q, Xu X, Li G, Zhang S, Mao B, Chen D. Ma P, et al. Among authors: chen d. Cell Rep. 2022 Jun 21;39(12):110979. doi: 10.1016/j.celrep.2022.110979. Cell Rep. 2022. PMID: 35732129 Free article.
Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity.
Liu L, Liu C, Quintero A, Wu L, Yuan Y, Wang M, Cheng M, Leng L, Xu L, Dong G, Li R, Liu Y, Wei X, Xu J, Chen X, Lu H, Chen D, Wang Q, Zhou Q, Lin X, Li G, Liu S, Wang Q, Wang H, Fink JL, Gao Z, Liu X, Hou Y, Zhu S, Yang H, Ye Y, Lin G, Chen F, Herrmann C, Eils R, Shang Z, Xu X. Liu L, et al. Among authors: chen d, chen f, chen x. Nat Commun. 2019 Jan 28;10(1):470. doi: 10.1038/s41467-018-08205-7. Nat Commun. 2019. PMID: 30692544 Free PMC article.
Single-cell brain atlas of Parkinson's disease mouse model.
Zhong J, Tang G, Zhu J, Wu W, Li G, Lin X, Liang L, Chai C, Zeng Y, Wang F, Luo L, Li J, Chen F, Huang Z, Zhang X, Zhang Y, Liu H, Qiu X, Tang S, Chen D. Zhong J, et al. Among authors: chen d, chen f. J Genet Genomics. 2021 Apr 20;48(4):277-288. doi: 10.1016/j.jgg.2021.01.003. Epub 2021 Feb 18. J Genet Genomics. 2021. PMID: 34052184 Free article.
The trans-omics landscape of COVID-19.
Wu P, Chen D, Ding W, Wu P, Hou H, Bai Y, Zhou Y, Li K, Xiang S, Liu P, Ju J, Guo E, Liu J, Yang B, Fan J, He L, Sun Z, Feng L, Wang J, Wu T, Wang H, Cheng J, Xing H, Meng Y, Li Y, Zhang Y, Luo H, Xie G, Lan X, Tao Y, Li J, Yuan H, Huang K, Sun W, Qian X, Li Z, Huang M, Ding P, Wang H, Qiu J, Wang F, Wang S, Zhu J, Ding X, Chai C, Liang L, Wang X, Luo L, Sun Y, Yang Y, Zhuang Z, Li T, Tian L, Zhang S, Zhu L, Chang A, Chen L, Wu Y, Ma X, Chen F, Ren Y, Xu X, Liu S, Wang J, Yang H, Wang L, Sun C, Ma D, Jin X, Chen G. Wu P, et al. Among authors: chen l, chen d, chen f, chen g. Nat Commun. 2021 Jul 27;12(1):4543. doi: 10.1038/s41467-021-24482-1. Nat Commun. 2021. PMID: 34315889 Free PMC article.
VThunter: a database for single-cell screening of virus target cells in the animal kingdom.
Chen D, Tan C, Ding P, Luo L, Zhu J, Jiang X, Ou Z, Ding X, Lan T, Zhu Y, Jia Y, Wei Y, Li R, Qin Q, Sun C, Zhao W, Lv Z, Wang H, Wu W, Yuan Y, Pu M, Li Y, Zhang Y, Chang A, Guo G, Bai Y, Jin X, Liu H. Chen D, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D934-D942. doi: 10.1093/nar/gkab894. Nucleic Acids Res. 2022. PMID: 34634807 Free PMC article.
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