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Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization.
Hu F, Chen AA, Horng H, Bashyam V, Davatzikos C, Alexander-Bloch A, Li M, Shou H, Satterthwaite TD, Yu M, Shinohara RT. Hu F, et al. Among authors: chen aa. Neuroimage. 2023 Jul 1;274:120125. doi: 10.1016/j.neuroimage.2023.120125. Epub 2023 Apr 20. Neuroimage. 2023. PMID: 37084926 Free PMC article. Review.
Pitfalls in brain age analyses.
Butler ER, Chen A, Ramadan R, Le TT, Ruparel K, Moore TM, Satterthwaite TD, Zhang F, Shou H, Gur RC, Nichols TE, Shinohara RT. Butler ER, et al. Hum Brain Mapp. 2021 Sep;42(13):4092-4101. doi: 10.1002/hbm.25533. Epub 2021 Jun 30. Hum Brain Mapp. 2021. PMID: 34190372 Free PMC article.
Privacy-preserving harmonization via distributed ComBat.
Chen AA, Luo C, Chen Y, Shinohara RT, Shou H; Alzheimer’s Disease Neuroimaging Initiative. Chen AA, et al. Among authors: chen y. Neuroimage. 2022 Mar;248:118822. doi: 10.1016/j.neuroimage.2021.118822. Epub 2021 Dec 25. Neuroimage. 2022. PMID: 34958950 Free PMC article.
Harmonizing functional connectivity reduces scanner effects in community detection.
Chen AA, Srinivasan D, Pomponio R, Fan Y, Nasrallah IM, Resnick SM, Beason-Held LL, Davatzikos C, Satterthwaite TD, Bassett DS, Shinohara RT, Shou H. Chen AA, et al. Neuroimage. 2022 Aug 1;256:119198. doi: 10.1016/j.neuroimage.2022.119198. Epub 2022 Apr 11. Neuroimage. 2022. PMID: 35421567 Free PMC article.
Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age.
Zuroff L, Rezk A, Shinoda K, Espinoza DA, Elyahu Y, Zhang B, Chen AA, Shinohara RT, Jacobs D, Alcalay RN, Tropea TF, Chen-Plotkin A, Monsonego A, Li R, Bar-Or A. Zuroff L, et al. Among authors: chen aa, chen plotkin a. EBioMedicine. 2022 Aug;82:104179. doi: 10.1016/j.ebiom.2022.104179. Epub 2022 Jul 19. EBioMedicine. 2022. PMID: 35868128 Free PMC article.
Interpretable surface-based detection of focal cortical dysplasias: a Multi-centre Epilepsy Lesion Detection study.
Spitzer H, Ripart M, Whitaker K, D'Arco F, Mankad K, Chen AA, Napolitano A, De Palma L, De Benedictis A, Foldes S, Humphreys Z, Zhang K, Hu W, Mo J, Likeman M, Davies S, Güttler C, Lenge M, Cohen NT, Tang Y, Wang S, Chari A, Tisdall M, Bargallo N, Conde-Blanco E, Pariente JC, Pascual-Diaz S, Delgado-Martínez I, Pérez-Enríquez C, Lagorio I, Abela E, Mullatti N, O'Muircheartaigh J, Vecchiato K, Liu Y, Caligiuri ME, Sinclair B, Vivash L, Willard A, Kandasamy J, McLellan A, Sokol D, Semmelroch M, Kloster AG, Opheim G, Ribeiro L, Yasuda C, Rossi-Espagnet C, Hamandi K, Tietze A, Barba C, Guerrini R, Gaillard WD, You X, Wang I, González-Ortiz S, Severino M, Striano P, Tortora D, Kälviäinen R, Gambardella A, Labate A, Desmond P, Lui E, O'Brien T, Shetty J, Jackson G, Duncan JS, Winston GP, Pinborg LH, Cendes F, Theis FJ, Shinohara RT, Cross JH, Baldeweg T, Adler S, Wagstyl K. Spitzer H, et al. Among authors: chen aa. Brain. 2022 Nov 21;145(11):3859-3871. doi: 10.1093/brain/awac224. Brain. 2022. PMID: 35953082 Free PMC article.
Deconfounded Dimension Reduction via Partial Embeddings.
Chen AA, Clark K, Dewey B, DuVal A, Pellegrini N, Nair G, Jalkh Y, Khalil S, Zurawski J, Calabresi P, Reich D, Bakshi R, Shou H, Shinohara RT. Chen AA, et al. bioRxiv [Preprint]. 2023 Jan 11:2023.01.10.523448. doi: 10.1101/2023.01.10.523448. bioRxiv. 2023. PMID: 36711940 Free PMC article. Preprint.
133 results