Cheema J - Search Results

1

In vivo single-molecule analysis reveals COOLAIR RNA structural diversity.

Yang M, Zhu P, Cheema J, Bloomer R, Mikulski P, Liu Q, Zhang Y, Dean C, Ding Y. Yang M, et al. Among authors: cheema j. Nature. 2022 Sep;609(7926):394-399. doi: 10.1038/s41586-022-05135-9. Epub 2022 Aug 17. Nature. 2022. PMID: 35978193 Free PMC article.

2

FoldAtlas: a repository for genome-wide RNA structure probing data.

Norris M, Kwok CK, Cheema J, Hartley M, Morris RJ, Aviran S, Ding Y. Norris M, et al. Among authors: cheema j. Bioinformatics. 2017 Jan 15;33(2):306-308. doi: 10.1093/bioinformatics/btw611. Epub 2016 Sep 22. Bioinformatics. 2017. PMID: 27663500 Free PMC article.

3

Rice In Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants.

Deng H, Cheema J, Zhang H, Woolfenden H, Norris M, Liu Z, Liu Q, Yang X, Yang M, Deng X, Cao X, Ding Y. Deng H, et al. Among authors: cheema j. Mol Plant. 2018 Apr 2;11(4):607-622. doi: 10.1016/j.molp.2018.01.008. Epub 2018 Feb 1. Mol Plant. 2018. PMID: 29409859 Free PMC article.

4

Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo.

Yang M, Woolfenden HC, Zhang Y, Fang X, Liu Q, Vigh ML, Cheema J, Yang X, Norris M, Yu S, Carbonell A, Brodersen P, Wang J, Ding Y. Yang M, et al. Among authors: cheema j. Nucleic Acids Res. 2020 Sep 4;48(15):8767-8781. doi: 10.1093/nar/gkaa577. Nucleic Acids Res. 2020. PMID: 32652041 Free PMC article.

5

RNA G-quadruplex structures exist and function in vivo in plants.

Yang X, Cheema J, Zhang Y, Deng H, Duncan S, Umar MI, Zhao J, Liu Q, Cao X, Kwok CK, Ding Y. Yang X, et al. Among authors: cheema j. Genome Biol. 2020 Sep 1;21(1):226. doi: 10.1186/s13059-020-02142-9. Genome Biol. 2020. PMID: 32873317 Free PMC article.

6

Formation and diversification of a paradigm biosynthetic gene cluster in plants.

Liu Z, Cheema J, Vigouroux M, Hill L, Reed J, Paajanen P, Yant L, Osbourn A. Liu Z, et al. Among authors: cheema j. Nat Commun. 2020 Oct 23;11(1):5354. doi: 10.1038/s41467-020-19153-6. Nat Commun. 2020. PMID: 33097700 Free PMC article.

7

In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants.

Liu Z, Liu Q, Yang X, Zhang Y, Norris M, Chen X, Cheema J, Zhang H, Ding Y. Liu Z, et al. Among authors: cheema j. Genome Biol. 2021 Jan 4;22(1):11. doi: 10.1186/s13059-020-02236-4. Genome Biol. 2021. PMID: 33397430 Free PMC article.

8

Appressorium-mediated plant infection by Magnaporthe oryzae is regulated by a Pmk1-dependent hierarchical transcriptional network.

Osés-Ruiz M, Cruz-Mireles N, Martin-Urdiroz M, Soanes DM, Eseola AB, Tang B, Derbyshire P, Nielsen M, Cheema J, Were V, Eisermann I, Kershaw MJ, Yan X, Valdovinos-Ponce G, Molinari C, Littlejohn GR, Valent B, Menke FLH, Talbot NJ. Osés-Ruiz M, et al. Among authors: cheema j. Nat Microbiol. 2021 Nov;6(11):1383-1397. doi: 10.1038/s41564-021-00978-w. Epub 2021 Oct 27. Nat Microbiol. 2021. PMID: 34707224

9

Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry.

Yang X, Yu H, Sun W, Ding L, Li J, Cheema J, Ramirez-Gonzalez R, Zhao X, Martín AC, Lu F, Liu B, Uauy C, Ding Y, Zhang H. Yang X, et al. Among authors: cheema j. Genome Biol. 2021 Nov 30;22(1):326. doi: 10.1186/s13059-021-02549-y. Genome Biol. 2021. PMID: 34847934 Free PMC article.

10

RNA G-quadruplex structure contributes to cold adaptation in plants.

Yang X, Yu H, Duncan S, Zhang Y, Cheema J, Liu H, Benjamin Miller J, Zhang J, Kwok CK, Zhang H, Ding Y. Yang X, et al. Among authors: cheema j. Nat Commun. 2022 Oct 20;13(1):6224. doi: 10.1038/s41467-022-34040-y. Nat Commun. 2022. PMID: 36266343 Free PMC article.

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