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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus.
Tabima JF, Trautman IA, Chang Y, Wang Y, Mondo S, Kuo A, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW. Tabima JF, et al. Among authors: chang y. G3 (Bethesda). 2020 Sep 2;10(9):3417-3433. doi: 10.1534/g3.120.401516. G3 (Bethesda). 2020. PMID: 32727924 Free PMC article.
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. Spatafora JW, et al. Among authors: chang y. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. Mycologia. 2016. PMID: 27738200 Free PMC article.
Diploid-dominant life cycles characterize the early evolution of Fungi.
Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY. Amses KR, et al. Among authors: chang y. Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119. Epub 2022 Aug 29. Proc Natl Acad Sci U S A. 2022. PMID: 36037379 Free PMC article.
Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, Chang Y, Pawlowska TE, Heitman J, Vilgalys R, Bonito G, Benny GL, Smith ME, Reynolds N, James TY, Grigoriev IV, Spatafora JW, Stajich JE. Gryganskyi AP, et al. Among authors: chang y. Microorganisms. 2023 Jul 18;11(7):1830. doi: 10.3390/microorganisms11071830. Microorganisms. 2023. PMID: 37513002 Free PMC article. Review.
A genome-scale phylogeny of the kingdom Fungi.
Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. Li Y, et al. Among authors: chang y. Curr Biol. 2021 Apr 26;31(8):1653-1665.e5. doi: 10.1016/j.cub.2021.01.074. Epub 2021 Feb 18. Curr Biol. 2021. PMID: 33607033 Free PMC article.
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses.
Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY. Myers JM, et al. Among authors: chang y. mBio. 2020 Sep 8;11(5):e02027-20. doi: 10.1128/mBio.02027-20. mBio. 2020. PMID: 32900807 Free PMC article.
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