Chang JW - Search Results

1

Platform-integrated mRNA isoform quantification.

Sun J, Chang JW, Zhang T, Yong J, Kuang R, Zhang W. Sun J, et al. Among authors: chang jw. Bioinformatics. 2020 Apr 15;36(8):2466-2473. doi: 10.1093/bioinformatics/btz932. Bioinformatics. 2020. PMID: 31834359 Free PMC article.

2

mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation.

Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J. Chang JW, et al. Nat Commun. 2015 Jun 15;6:7218. doi: 10.1038/ncomms8218. Nat Commun. 2015. PMID: 26074333 Free article.

3

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.

Zhang W, Chang JW, Lin L, Minn K, Wu B, Chien J, Yong J, Zheng H, Kuang R. Zhang W, et al. Among authors: chang jw. PLoS Comput Biol. 2015 Dec 23;11(12):e1004465. doi: 10.1371/journal.pcbi.1004465. eCollection 2015 Dec. PLoS Comput Biol. 2015. PMID: 26699225 Free PMC article.

4

Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks.

Yeh HS, Chang JW, Yong J. Yeh HS, et al. Among authors: chang jw. Methods Mol Biol. 2016;1421:165-74. doi: 10.1007/978-1-4939-3591-8_14. Methods Mol Biol. 2016. PMID: 26965265

5

Alternative Polyadenylation in Human Diseases.

Chang JW, Yeh HS, Yong J. Chang JW, et al. Endocrinol Metab (Seoul). 2017 Dec;32(4):413-421. doi: 10.3803/EnM.2017.32.4.413. Endocrinol Metab (Seoul). 2017. PMID: 29271615 Free PMC article. Review.

6

An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response.

Chang JW, Zhang W, Yeh HS, Park M, Yao C, Shi Y, Kuang R, Yong J. Chang JW, et al. Nucleic Acids Res. 2018 Jul 6;46(12):5996-6008. doi: 10.1093/nar/gky340. Nucleic Acids Res. 2018. PMID: 29733382 Free PMC article.

7

mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control.

Chang JW, Yeh HS, Park M, Erber L, Sun J, Cheng S, Bui AM, Fahmi NA, Nasti R, Kuang R, Chen Y, Zhang W, Yong J. Chang JW, et al. Nucleic Acids Res. 2019 Nov 4;47(19):10373-10387. doi: 10.1093/nar/gkz761. Nucleic Acids Res. 2019. PMID: 31504847 Free PMC article.

8

A large-scale comparative study of isoform expressions measured on four platforms.

Zhang W, Petegrosso R, Chang JW, Sun J, Yong J, Chien J, Kuang R. Zhang W, et al. Among authors: chang jw. BMC Genomics. 2020 Mar 30;21(1):272. doi: 10.1186/s12864-020-6643-8. BMC Genomics. 2020. PMID: 32228441 Free PMC article.

9

AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.

Fahmi NA, Nassereddeen H, Chang J, Park M, Yeh H, Sun J, Fan D, Yong J, Zhang W. Fahmi NA, et al. Int J Mol Sci. 2021 Apr 25;22(9):4468. doi: 10.3390/ijms22094468. Int J Mol Sci. 2021. PMID: 33922891 Free PMC article.

10

APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.

Fahmi NA, Ahmed KT, Chang JW, Nassereddeen H, Fan D, Yong J, Zhang W. Fahmi NA, et al. Among authors: chang jw. BMC Bioinformatics. 2022 Sep 28;23(Suppl 3):396. doi: 10.1186/s12859-022-04939-w. BMC Bioinformatics. 2022. PMID: 36171568 Free PMC article.

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