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A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.
Yao Z, van Velthoven CTJ, Kunst M, Zhang M, McMillen D, Lee C, Jung W, Goldy J, Abdelhak A, Aitken M, Baker K, Baker P, Barkan E, Bertagnolli D, Bhandiwad A, Bielstein C, Bishwakarma P, Campos J, Carey D, Casper T, Chakka AB, Chakrabarty R, Chavan S, Chen M, Clark M, Close J, Crichton K, Daniel S, DiValentin P, Dolbeare T, Ellingwood L, Fiabane E, Fliss T, Gee J, Gerstenberger J, Glandon A, Gloe J, Gould J, Gray J, Guilford N, Guzman J, Hirschstein D, Ho W, Hooper M, Huang M, Hupp M, Jin K, Kroll M, Lathia K, Leon A, Li S, Long B, Madigan Z, Malloy J, Malone J, Maltzer Z, Martin N, McCue R, McGinty R, Mei N, Melchor J, Meyerdierks E, Mollenkopf T, Moonsman S, Nguyen TN, Otto S, Pham T, Rimorin C, Ruiz A, Sanchez R, Sawyer L, Shapovalova N, Shepard N, Slaughterbeck C, Sulc J, Tieu M, Torkelson A, Tung H, Valera Cuevas N, Vance S, Wadhwani K, Ward K, Levi B, Farrell C, Young R, Staats B, Wang MM, Thompson CL, Mufti S, Pagan CM, Kruse L, Dee N, Sunkin SM, Esposito L, Hawrylycz MJ, Waters J, Ng L, Smith K, Tasic B, Zhuang X, Zeng H. Yao Z, et al. Among authors: chakrabarty r. Nature. 2023 Dec;624(7991):317-332. doi: 10.1038/s41586-023-06812-z. Epub 2023 Dec 13. Nature. 2023. PMID: 38092916 Free PMC article.
Integrated multimodal cell atlas of Alzheimer's disease.
Gabitto MI, Travaglini KJ, Rachleff VM, Kaplan ES, Long B, Ariza J, Ding Y, Mahoney JT, Dee N, Goldy J, Melief EJ, Brouner K, Campos J, Carr AJ, Casper T, Chakrabarty R, Clark M, Compos J, Cool J, Valera Cuevas NJ, Dalley R, Darvas M, Ding SL, Dolbeare T, Mac Donald CL, Egdorf T, Esposito L, Ferrer R, Gala R, Gary A, Gloe J, Guilford N, Guzman J, Ho W, Jarksy T, Johansen N, Kalmbach BE, Keene LM, Khawand S, Kilgore M, Kirkland A, Kunst M, Lee BR, Malone J, Maltzer Z, Martin N, McCue R, McMillen D, Meyerdierks E, Meyers KP, Mollenkopf T, Montine M, Nolan AL, Nyhus J, Olsen PA, Pacleb M, Pham T, Pom CA, Postupna N, Ruiz A, Schantz AM, Sorensen SA, Staats B, Sullivan M, Sunkin SM, Thompson C, Tieu M, Ting J, Torkelson A, Tran T, Wang MQ, Waters J, Wilson AM, Haynor D, Gatto N, Jayadev S, Mufti S, Ng L, Mukherjee S, Crane PK, Latimer CS, Levi BP, Smith K, Close JL, Miller JA, Hodge RD, Larson EB, Grabowski TJ, Hawrylycz M, Keene CD, Lein ES. Gabitto MI, et al. Among authors: chakrabarty r. Res Sq [Preprint]. 2023 May 23:rs.3.rs-2921860. doi: 10.21203/rs.3.rs-2921860/v1. Res Sq. 2023. PMID: 37292694 Free PMC article. Preprint.
Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas.
Jin K, Yao Z, van Velthoven CTJ, Kaplan ES, Glattfelder K, Barlow ST, Boyer G, Carey D, Casper T, Chakka AB, Chakrabarty R, Clark M, Departee M, Desierto M, Gary A, Gloe J, Goldy J, Guilford N, Guzman J, Hirschstein D, Lee C, Liang E, Pham T, Reding M, Ronellenfitch K, Ruiz A, Sevigny J, Shapovalova N, Shulga L, Sulc J, Torkelson A, Tung H, Levi B, Sunkin SM, Dee N, Esposito L, Smith K, Tasic B, Zeng H. Jin K, et al. Among authors: chakrabarty r. bioRxiv [Preprint]. 2023 Jul 27:2023.07.26.550355. doi: 10.1101/2023.07.26.550355. bioRxiv. 2023. PMID: 38168182 Free PMC article. Preprint.
Transcriptional elongation control of hypoxic response.
Soliman SHA, Iwanaszko M, Zheng B, Gold S, Howard BC, Das M, Chakrabarty RP, Chandel NS, Shilatifard A. Soliman SHA, et al. Among authors: chakrabarty rp. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2321502121. doi: 10.1073/pnas.2321502121. Epub 2024 Apr 2. Proc Natl Acad Sci U S A. 2024. PMID: 38564636
A Drosophila model of mitochondrial disease phenotypic heterogeneity.
Granat L, Knorr DY, Ranson DC, Chakrabarty RP, Chandel NS, Bateman JM. Granat L, et al. Among authors: chakrabarty rp. Biol Open. 2024 Feb 15;13(2):bio060278. doi: 10.1242/bio.060278. Epub 2024 Feb 28. Biol Open. 2024. PMID: 38304969 Free PMC article.
Summer Olympic sports and female athletes: comparison of anti-doping collections and prohibited substances detected in Australia and New Zealand vs. France.
Buisson C, Brooker L, Goebel C, Morrow R, Chakrabarty R, Speers N, Molina A, Ericsson M, Collomp K. Buisson C, et al. Among authors: chakrabarty r. Front Sports Act Living. 2023 Sep 8;5:1213735. doi: 10.3389/fspor.2023.1213735. eCollection 2023. Front Sports Act Living. 2023. PMID: 37745202 Free PMC article.
Shortwave absorption by wildfire smoke dominated by dark brown carbon.
Chakrabarty RK, Shetty NJ, Thind AS, Beeler P, Sumlin BJ, Zhang C, Liu P, Idrobo JC, Adachi K, Wagner NL, Schwarz JP, Ahern A, Sedlacek AJ 3rd, Lambe A, Daube C, Lyu M, Liu C, Herndon S, Onasch TB, Mishra R. Chakrabarty RK, et al. Nat Geosci. 2023;16(8):683-688. doi: 10.1038/s41561-023-01237-9. Epub 2023 Aug 7. Nat Geosci. 2023. PMID: 37564378 Free PMC article.
Mitochondrial integrated stress response controls lung epithelial cell fate.
Han S, Lee M, Shin Y, Giovanni R, Chakrabarty RP, Herrerias MM, Dada LA, Flozak AS, Reyfman PA, Khuder B, Reczek CR, Gao L, Lopéz-Barneo J, Gottardi CJ, Budinger GRS, Chandel NS. Han S, et al. Among authors: chakrabarty rp. Nature. 2023 Aug;620(7975):890-897. doi: 10.1038/s41586-023-06423-8. Epub 2023 Aug 9. Nature. 2023. PMID: 37558881 Free PMC article.
137 results