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Standards for sequencing viral genomes in the era of high-throughput sequencing.
Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY; Threat Characterization Consortium; Sozhamannan S, Bradburne C, Palacios G. Ladner JT, et al. Among authors: chain ps. mBio. 2014 Jun 17;5(3):e01360-14. doi: 10.1128/mBio.01360-14. mBio. 2014. PMID: 24939889 Free PMC article.
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.
Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium. Ahmed SA, et al. Among authors: chain ps. PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1. PLoS One. 2012. PMID: 23133618 Free PMC article.
Draft Genome Assembly of Acinetobacter baumannii ATCC 19606.
Davenport KW, Daligault HE, Minogue TD, Bruce DC, Chain PS, Coyne SR, Jaissle JG, Koroleva GI, Ladner JT, Li PE, Palacios GF, Scholz MB, Teshima H, Johnson SL. Davenport KW, et al. Among authors: chain ps. Genome Announc. 2014 Aug 21;2(4):e00832-14. doi: 10.1128/genomeA.00832-14. Genome Announc. 2014. PMID: 25146140 Free PMC article.
Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.
Chapman C, Henry M, Bishop-Lilly KA, Awosika J, Briska A, Ptashkin RN, Wagner T, Rajanna C, Tsang H, Johnson SL, Mokashi VP, Chain PS, Sozhamannan S. Chapman C, et al. Among authors: chain ps. PLoS One. 2015 Mar 20;10(3):e0120311. doi: 10.1371/journal.pone.0120311. eCollection 2015. PLoS One. 2015. PMID: 25794000 Free PMC article.
Active Targeted Surveillance to Identify Sites of Emergence of Hantavirus.
Kim WK, No JS, Lee D, Jung J, Park H, Yi Y, Kim JA, Lee SH, Kim Y, Park S, Cho S, Lee GY, Song DH, Gu SH, Park K, Kim HC, Wiley MR, Chain PSG, Jeong ST, Klein TA, Palacios G, Song JW. Kim WK, et al. Clin Infect Dis. 2020 Jan 16;70(3):464-473. doi: 10.1093/cid/ciz234. Clin Infect Dis. 2020. PMID: 30891596
Genomics. Genome project standards in a new era of sequencing.
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium; Detter JC. Chain PS, et al. Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. Science. 2009. PMID: 19815760 Free PMC article.
294 results