Cazzaniga P - Search Results

1

Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning.

Papetti DM, Spolaor S, Nazari I, Tirelli A, Leonardi T, Caprioli C, Besozzi D, Vlachou T, Pelicci PG, Cazzaniga P, Nobile MS. Papetti DM, et al. Among authors: cazzaniga p. Front Bioinform. 2023 Apr 27;3:1067113. doi: 10.3389/fbinf.2023.1067113. eCollection 2023. Front Bioinform. 2023. PMID: 37181486 Free PMC article.

2

LASSIE: simulating large-scale models of biochemical systems on GPUs.

Tangherloni A, Nobile MS, Besozzi D, Mauri G, Cazzaniga P. Tangherloni A, et al. Among authors: cazzaniga p. BMC Bioinformatics. 2017 May 10;18(1):246. doi: 10.1186/s12859-017-1666-0. BMC Bioinformatics. 2017. PMID: 28486952 Free PMC article.

3

Modeling cell proliferation in human acute myeloid leukemia xenografts.

Nobile MS, Vlachou T, Spolaor S, Bossi D, Cazzaniga P, Lanfrancone L, Mauri G, Pelicci PG, Besozzi D. Nobile MS, et al. Among authors: cazzaniga p. Bioinformatics. 2019 Sep 15;35(18):3378-3386. doi: 10.1093/bioinformatics/btz063. Bioinformatics. 2019. PMID: 30753298 Free PMC article.

4

GenHap: a novel computational method based on genetic algorithms for haplotype assembly.

Tangherloni A, Spolaor S, Rundo L, Nobile MS, Cazzaniga P, Mauri G, Liò P, Merelli I, Besozzi D. Tangherloni A, et al. Among authors: cazzaniga p. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):172. doi: 10.1186/s12859-019-2691-y. BMC Bioinformatics. 2019. PMID: 30999845 Free PMC article.

5

Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells.

Nobile MS, Votta G, Palorini R, Spolaor S, De Vitto H, Cazzaniga P, Ricciardiello F, Mauri G, Alberghina L, Chiaradonna F, Besozzi D. Nobile MS, et al. Among authors: cazzaniga p. Bioinformatics. 2020 Apr 1;36(7):2181-2188. doi: 10.1093/bioinformatics/btz868. Bioinformatics. 2020. PMID: 31750879 Free PMC article.

6

Screening for Combination Cancer Therapies With Dynamic Fuzzy Modeling and Multi-Objective Optimization.

Spolaor S, Scheve M, Firat M, Cazzaniga P, Besozzi D, Nobile MS. Spolaor S, et al. Among authors: cazzaniga p. Front Genet. 2021 Mar 31;12:617935. doi: 10.3389/fgene.2021.617935. eCollection 2021. Front Genet. 2021. PMID: 33868363 Free PMC article.

7

Modeling Calcium Signaling in S. cerevisiae Highlights the Role and Regulation of the Calmodulin-Calcineurin Pathway in Response to Hypotonic Shock.

Spolaor S, Rovetta M, Nobile MS, Cazzaniga P, Tisi R, Besozzi D. Spolaor S, et al. Among authors: cazzaniga p. Front Mol Biosci. 2022 May 18;9:856030. doi: 10.3389/fmolb.2022.856030. eCollection 2022. Front Mol Biosci. 2022. PMID: 35664674 Free PMC article.

8

GPU-powered model analysis with PySB/cupSODA.

Harris LA, Nobile MS, Pino JC, Lubbock ALR, Besozzi D, Mauri G, Cazzaniga P, Lopez CF. Harris LA, et al. Among authors: cazzaniga p. Bioinformatics. 2017 Nov 1;33(21):3492-3494. doi: 10.1093/bioinformatics/btx420. Bioinformatics. 2017. PMID: 28666314 Free PMC article.

9

Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling.

Manzoni L, Papetti DM, Cazzaniga P, Spolaor S, Mauri G, Besozzi D, Nobile MS. Manzoni L, et al. Among authors: cazzaniga p. Entropy (Basel). 2020 Feb 29;22(3):285. doi: 10.3390/e22030285. Entropy (Basel). 2020. PMID: 33286059 Free PMC article.

10

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.

Tangherloni A, Nobile MS, Cazzaniga P, Capitoli G, Spolaor S, Rundo L, Mauri G, Besozzi D. Tangherloni A, et al. Among authors: cazzaniga p. PLoS Comput Biol. 2021 Sep 9;17(9):e1009410. doi: 10.1371/journal.pcbi.1009410. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34499658 Free PMC article.

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