Carvalho AB - Search Results

1

Phylogenetic resolution of the fly superfamily Ephydroidea-Molecular systematics of the enigmatic and diverse relatives of Drosophilidae.

Winkler IS, Kirk-Spriggs AH, Bayless KM, Soghigian J, Meier R, Pape T, Yeates DK, Carvalho AB, Copeland RS, Wiegmann BM. Winkler IS, et al. Among authors: carvalho ab. PLoS One. 2022 Oct 5;17(10):e0274292. doi: 10.1371/journal.pone.0274292. eCollection 2022. PLoS One. 2022. PMID: 36197946 Free PMC article.

2

A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly.

Dias GR, Dupim EG, Vanderlinde T, Mello B, Carvalho AB. Dias GR, et al. Among authors: carvalho ab. BMC Evol Biol. 2020 Nov 2;20(1):141. doi: 10.1186/s12862-020-01703-7. BMC Evol Biol. 2020. PMID: 33138771 Free PMC article.

3

DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics.

Finet C, Kassner VA, Carvalho AB, Chung H, Day JP, Day S, Delaney EK, De Ré FC, Dufour HD, Dupim E, Izumitani HF, Gautério TB, Justen J, Katoh T, Kopp A, Koshikawa S, Longdon B, Loreto EL, Nunes MDS, Raja KKB, Rebeiz M, Ritchie MG, Saakyan G, Sneddon T, Teramoto M, Tyukmaeva V, Vanderlinde T, Wey EE, Werner T, Williams TM, Robe LJ, Toda MJ, Marlétaz F. Finet C, et al. Among authors: carvalho ab. Genome Biol Evol. 2021 Aug 3;13(8):evab179. doi: 10.1093/gbe/evab179. Genome Biol Evol. 2021. PMID: 34343293 Free PMC article.

4

Efficient identification of Y chromosome sequences in the human and Drosophila genomes.

Carvalho AB, Clark AG. Carvalho AB, et al. Genome Res. 2013 Nov;23(11):1894-907. doi: 10.1101/gr.156034.113. Epub 2013 Aug 6. Genome Res. 2013. PMID: 23921660 Free PMC article.

5

New Genes in the Drosophila Y Chromosome: Lessons from D. willistoni.

Ricchio J, Uno F, Carvalho AB. Ricchio J, et al. Among authors: carvalho ab. Genes (Basel). 2021 Nov 18;12(11):1815. doi: 10.3390/genes12111815. Genes (Basel). 2021. PMID: 34828421 Free PMC article.

6

Positive and purifying selection on the Drosophila Y chromosome.

Singh ND, Koerich LB, Carvalho AB, Clark AG. Singh ND, et al. Among authors: carvalho ab. Mol Biol Evol. 2014 Oct;31(10):2612-23. doi: 10.1093/molbev/msu203. Epub 2014 Jun 27. Mol Biol Evol. 2014. PMID: 24974375 Free PMC article.

7

Low conservation of gene content in the Drosophila Y chromosome.

Koerich LB, Wang X, Clark AG, Carvalho AB. Koerich LB, et al. Among authors: carvalho ab. Nature. 2008 Dec 18;456(7224):949-51. doi: 10.1038/nature07463. Epub 2008 Nov 16. Nature. 2008. PMID: 19011613 Free PMC article.

8

Identification of the sex chromosome system in a sand fly species, Lutzomyia longipalpis s.l.

Vigoder FM, Araripe LO, Carvalho AB. Vigoder FM, et al. Among authors: carvalho ab. G3 (Bethesda). 2021 Aug 7;11(8):jkab217. doi: 10.1093/g3journal/jkab217. G3 (Bethesda). 2021. PMID: 34849827 Free PMC article.

9

An investigation of Y chromosome incorporations in 400 species of Drosophila and related genera.

Dupim EG, Goldstein G, Vanderlinde T, Vaz SC, Krsticevic F, Bastos A, Pinhão T, Torres M, David JR, Vilela CR, Carvalho AB. Dupim EG, et al. Among authors: carvalho ab. PLoS Genet. 2018 Nov 2;14(11):e1007770. doi: 10.1371/journal.pgen.1007770. eCollection 2018 Nov. PLoS Genet. 2018. PMID: 30388103 Free PMC article.

10

Improved assembly of noisy long reads by k-mer validation.

Carvalho AB, Dupim EG, Goldstein G. Carvalho AB, et al. Genome Res. 2016 Dec;26(12):1710-1720. doi: 10.1101/gr.209247.116. Epub 2016 Oct 7. Genome Res. 2016. PMID: 27831497 Free PMC article.

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