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Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies.
Front Microbiol. 2021 Nov 5;12:738284. doi: 10.3389/fmicb.2021.738284. eCollection 2021.
Front Microbiol. 2021.
PMID: 34803953
Free PMC article.
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Buytaers FE, Saltykova A, Denayer S, Verhaegen B, Vanneste K, Roosens NHC, Piérard D, Marchal K, De Keersmaecker SCJ.
Buytaers FE, et al.
Microorganisms. 2020 Aug 5;8(8):1191. doi: 10.3390/microorganisms8081191.
Microorganisms. 2020.
PMID: 32764329
Free PMC article.
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Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Saltykova A, Buytaers FE, Denayer S, Verhaegen B, Piérard D, Roosens NHC, Marchal K, De Keersmaecker SCJ.
Saltykova A, et al. Among authors: buytaers fe.
Int J Mol Sci. 2020 Aug 8;21(16):5688. doi: 10.3390/ijms21165688.
Int J Mol Sci. 2020.
PMID: 32784459
Free PMC article.
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Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak.
Buytaers FE, Saltykova A, Mattheus W, Verhaegen B, Roosens NHC, Vanneste K, Laisnez V, Hammami N, Pochet B, Cantaert V, Marchal K, Denayer S, De Keersmaecker SCJ.
Buytaers FE, et al.
Microb Genom. 2021 Apr;7(4):000547. doi: 10.1099/mgen.0.000547.
Microb Genom. 2021.
PMID: 33826490
Free PMC article.
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A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products.
Buytaers FE, Fraiture MA, Berbers B, Vandermassen E, Hoffman S, Papazova N, Vanneste K, Marchal K, Roosens NHC, De Keersmaecker SCJ.
Buytaers FE, et al.
Food Chem (Oxf). 2021 Apr 21;2:100023. doi: 10.1016/j.fochms.2021.100023. eCollection 2021 Jul 30.
Food Chem (Oxf). 2021.
PMID: 35415629
Free PMC article.
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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Buytaers FE, Verhaegen B, Van Nieuwenhuysen T, Roosens NHC, Vanneste K, Marchal K, De Keersmaecker SCJ.
Buytaers FE, et al.
Front Microbiol. 2024 Mar 1;15:1330814. doi: 10.3389/fmicb.2024.1330814. eCollection 2024.
Front Microbiol. 2024.
PMID: 38495515
Free PMC article.
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Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study.
Buytaers FE, Verhaegen B, Gand M, D'aes J, Vanneste K, Roosens NHC, Marchal K, Denayer S, De Keersmaecker SCJ.
Buytaers FE, et al.
Foods. 2022 Oct 25;11(21):3348. doi: 10.3390/foods11213348.
Foods. 2022.
PMID: 36359961
Free PMC article.
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