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LungMAP Portal Ecosystem: Systems-level Exploration of the Lung.
Gaddis N, Fortriede J, Guo M, Bardes EE, Kouril M, Tabar S, Burns K, Ardini-Poleske ME, Loos S, Schnell D, Jin K, Iyer B, Du Y, Huo BX, Bhattacharjee A, Korte J, Munshi R, Smith V, Herbst A, Kitzmiller JA, Clair GC, Carson JP, Adkins J, Morrisey EE, Pryhuber GS, Misra R, Whitsett JA, Sun X, Heathorn T, Paten B, Prasath VBS, Xu Y, Tickle T, Aronow BJ, Salomonis N. Gaddis N, et al. Among authors: burns k. Am J Respir Cell Mol Biol. 2024 Feb;70(2):129-139. doi: 10.1165/rcmb.2022-0165OC. Am J Respir Cell Mol Biol. 2024. PMID: 36413377 Free PMC article.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. James-Zorn C, et al. Among authors: burns k. Methods Mol Biol. 2018;1757:251-305. doi: 10.1007/978-1-4939-7737-6_10. Methods Mol Biol. 2018. PMID: 29761462 Free PMC article.
Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Karimi K, et al. Among authors: burns ka. Nucleic Acids Res. 2018 Jan 4;46(D1):D861-D868. doi: 10.1093/nar/gkx936. Nucleic Acids Res. 2018. PMID: 29059324 Free PMC article.
Xenbase: Facilitating the Use of Xenopus to Model Human Disease.
Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, Zorn AM. Nenni MJ, et al. Among authors: burns ka. Front Physiol. 2019 Feb 26;10:154. doi: 10.3389/fphys.2019.00154. eCollection 2019. Front Physiol. 2019. PMID: 30863320 Free PMC article. Review.
Xenbase: Core features, data acquisition, and data processing.
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: burns ka. Genesis. 2015 Aug;53(8):486-97. doi: 10.1002/dvg.22873. Epub 2015 Jul 16. Genesis. 2015. PMID: 26150211 Free PMC article.
Xenbase: expansion and updates of the Xenopus model organism database.
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: burns ka. Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125366 Free PMC article.
Genome evolution in the allotetraploid frog Xenopus laevis.
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS. Session AM, et al. Among authors: burns k. Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840. Nature. 2016. PMID: 27762356 Free PMC article.
1,873 results