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Preparation of cfMeDIP-seq libraries for methylome profiling of plasma cell-free DNA.
Nat Protoc. 2019 Oct;14(10):2749-2780. doi: 10.1038/s41596-019-0202-2. Epub 2019 Aug 30.
Nat Protoc. 2019.
PMID: 31471598
Cell-free DNA as a post-treatment surveillance strategy: current status.
Burgener JM, Rostami A, De Carvalho DD, Bratman SV.
Burgener JM, et al.
Semin Oncol. 2017 Oct;44(5):330-346. doi: 10.1053/j.seminoncol.2018.01.009. Epub 2018 Feb 3.
Semin Oncol. 2017.
PMID: 29580435
Review.
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Tumor-Naïve Multimodal Profiling of Circulating Tumor DNA in Head and Neck Squamous Cell Carcinoma.
Burgener JM, Zou J, Zhao Z, Zheng Y, Shen SY, Huang SH, Keshavarzi S, Xu W, Liu FF, Liu G, Waldron JN, Weinreb I, Spreafico A, Siu LL, de Almeida JR, Goldstein DP, Hoffman MM, De Carvalho DD, Bratman SV.
Burgener JM, et al.
Clin Cancer Res. 2021 Aug 1;27(15):4230-4244. doi: 10.1158/1078-0432.CCR-21-0110. Epub 2021 Jun 22.
Clin Cancer Res. 2021.
PMID: 34158359
Free PMC article.
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Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls.
Wilson SL, Shen SY, Harmon L, Burgener JM, Triche T Jr, Bratman SV, De Carvalho DD, Hoffman MM.
Wilson SL, et al. Among authors: burgener jm.
Cell Rep Methods. 2022 Sep 9;2(9):100294. doi: 10.1016/j.crmeth.2022.100294. eCollection 2022 Sep 19.
Cell Rep Methods. 2022.
PMID: 36160046
Free PMC article.
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Early changes in tumor-naive cell-free methylomes and fragmentomes predict outcomes in pembrolizumab-treated solid tumors.
Stutheit-Zhao EY, Sanz-Garcia E, Liu ZA, Wong D, Marsh K, Abdul Razak AR, Spreafico A, Bedard PL, Hansen AR, Lheureux S, Torti D, Lam B, Yang SYC, Burgener J, Luo P, Zeng Y, Cheng N, Awadalla P, Bratman SV, Ohashi PS, Pugh TJ, Siu LL.
Stutheit-Zhao EY, et al.
Cancer Discov. 2024 Feb 23. doi: 10.1158/2159-8290.CD-23-1060. Online ahead of print.
Cancer Discov. 2024.
PMID: 38393391
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Sumoylation controls the timing of Tup1-mediated transcriptional deactivation.
Ng CH, Akhter A, Yurko N, Burgener JM, Rosonina E, Manley JL.
Ng CH, et al. Among authors: burgener jm.
Nat Commun. 2015 Mar 13;6:6610. doi: 10.1038/ncomms7610.
Nat Commun. 2015.
PMID: 25766875
Free PMC article.
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Dynamic sumoylation of promoter-bound general transcription factors facilitates transcription by RNA polymerase II.
Baig MS, Dou Y, Bergey BG, Bahar R, Burgener JM, Moallem M, McNeil JB, Akhter A, Burke GL, Sri Theivakadadcham VS, Richard P, D'Amours D, Rosonina E.
Baig MS, et al. Among authors: burgener jm.
PLoS Genet. 2021 Sep 29;17(9):e1009828. doi: 10.1371/journal.pgen.1009828. eCollection 2021 Sep.
PLoS Genet. 2021.
PMID: 34587155
Free PMC article.
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