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261 results

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SMaSH: Sample matching using SNPs in humans.
Westphal M, Frankhouser D, Sonzone C, Shields PG, Yan P, Bundschuh R. Westphal M, et al. Among authors: bundschuh r. BMC Genomics. 2019 Dec 30;20(Suppl 12):1001. doi: 10.1186/s12864-019-6332-7. BMC Genomics. 2019. PMID: 31888490 Free PMC article.
Comparison of insertional RNA editing in Myxomycetes.
Chen C, Frankhouser D, Bundschuh R. Chen C, et al. Among authors: bundschuh r. PLoS Comput Biol. 2012;8(2):e1002400. doi: 10.1371/journal.pcbi.1002400. Epub 2012 Feb 23. PLoS Comput Biol. 2012. PMID: 22383871 Free PMC article.
A Scalable, Flexible Workflow for MethylCap-Seq Data Analysis.
Rodriguez B, Tam HH, Frankhouser D, Trimarchi M, Murphy M, Kuo C, Parikh D, Ball B, Schwind S, Curfman J, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez B, et al. Among authors: bundschuh r. IEEE Int Workshop Genomic Signal Process Stat. 2011:1-4. doi: 10.1109/GENSiPS.2011.6169426. IEEE Int Workshop Genomic Signal Process Stat. 2011. PMID: 22484542 Free PMC article.
Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia.
Yan P, Frankhouser D, Murphy M, Tam HH, Rodriguez B, Curfman J, Trimarchi M, Geyer S, Wu YZ, Whitman SP, Metzeler K, Walker A, Klisovic R, Jacob S, Grever MR, Byrd JC, Bloomfield CD, Garzon R, Blum W, Caligiuri MA, Bundschuh R, Marcucci G. Yan P, et al. Among authors: bundschuh r. Blood. 2012 Sep 20;120(12):2466-74. doi: 10.1182/blood-2012-05-429175. Epub 2012 Jul 11. Blood. 2012. PMID: 22786882 Free PMC article.
Methods for high-throughput MethylCap-Seq data analysis.
Rodriguez BA, Frankhouser D, Murphy M, Trimarchi M, Tam HH, Curfman J, Huang R, Chan MW, Lai HC, Parikh D, Ball B, Schwind S, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez BA, et al. Among authors: bundschuh r. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2164-13-S6-S14. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134780 Free PMC article.
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
Trimarchi MP, Murphy M, Frankhouser D, Rodriguez BA, Curfman J, Marcucci G, Yan P, Bundschuh R. Trimarchi MP, et al. Among authors: bundschuh r. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2164-13-S8-S6. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281662 Free PMC article.
Toward personalized therapy in AML: in vivo benefit of targeting aberrant epigenetics in MLL-PTD-associated AML.
Bernot KM, Siebenaler RF, Whitman SP, Zorko NA, Marcucci GG, Santhanam R, Ahmed EH, Ngangana M, McConnell KK, Nemer JS, Brook DL, Kulp SK, Chen CS, Frankhouser D, Yan P, Bundschuh R, Zhang X, Dorrance AM, Dickerson KE, Jarjoura D, Blum W, Marcucci G, Caligiuri MA. Bernot KM, et al. Among authors: bundschuh r. Leukemia. 2013 Dec;27(12):2379-82. doi: 10.1038/leu.2013.147. Epub 2013 May 10. Leukemia. 2013. PMID: 23660685 Free PMC article. No abstract available.
Epigenetics meets genetics in acute myeloid leukemia: clinical impact of a novel seven-gene score.
Marcucci G, Yan P, Maharry K, Frankhouser D, Nicolet D, Metzeler KH, Kohlschmidt J, Mrózek K, Wu YZ, Bucci D, Curfman JP, Whitman SP, Eisfeld AK, Mendler JH, Schwind S, Becker H, Bär C, Carroll AJ, Baer MR, Wetzler M, Carter TH, Powell BL, Kolitz JE, Byrd JC, Plass C, Garzon R, Caligiuri MA, Stone RM, Volinia S, Bundschuh R, Bloomfield CD. Marcucci G, et al. Among authors: bundschuh r. J Clin Oncol. 2014 Feb 20;32(6):548-56. doi: 10.1200/JCO.2013.50.6337. Epub 2013 Dec 30. J Clin Oncol. 2014. PMID: 24378410 Free PMC article.
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Frankhouser DE, Murphy M, Blachly JS, Park J, Zoller MW, Ganbat JO, Curfman J, Byrd JC, Lin S, Marcucci G, Yan P, Bundschuh R. Frankhouser DE, et al. Among authors: bundschuh r. Bioinformatics. 2014 Dec 15;30(24):3567-74. doi: 10.1093/bioinformatics/btu583. Epub 2014 Aug 31. Bioinformatics. 2014. PMID: 25178460 Free PMC article.
261 results