Bulyk ML - Search Results

1

A Comprehensive Drosophila melanogaster Transcription Factor Interactome.

Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, Bulyk ML. Shokri L, et al. Among authors: bulyk ml. Cell Rep. 2019 Apr 16;27(3):955-970.e7. doi: 10.1016/j.celrep.2019.03.071. Cell Rep. 2019. PMID: 30995488 Free PMC article.

2

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells.

Philippakis AA, Busser BW, Gisselbrecht SS, He FS, Estrada B, Michelson AM, Bulyk ML. Philippakis AA, et al. Among authors: bulyk ml. PLoS Comput Biol. 2006 May;2(5):e53. doi: 10.1371/journal.pcbi.0020053. Epub 2006 May 26. PLoS Comput Biol. 2006. PMID: 16733548 Free PMC article.

3

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.

4

Protein binding microarrays for the characterization of DNA-protein interactions.

Bulyk ML. Bulyk ML. Adv Biochem Eng Biotechnol. 2007;104:65-85. doi: 10.1007/10_025. Adv Biochem Eng Biotechnol. 2007. PMID: 17290819 Free PMC article. Review.

5

Inferring condition-specific transcription factor function from DNA binding and gene expression data.

McCord RP, Berger MF, Philippakis AA, Bulyk ML. McCord RP, et al. Among authors: bulyk ml. Mol Syst Biol. 2007;3:100. doi: 10.1038/msb4100140. Epub 2007 Apr 17. Mol Syst Biol. 2007. PMID: 17437025 Free PMC article.

6

Functional trends in structural classes of the DNA binding domains of regulatory transcription factors.

McCord RP, Bulyk ML. McCord RP, et al. Among authors: bulyk ml. Pac Symp Biocomput. 2008:441-52. Pac Symp Biocomput. 2008. PMID: 18229706 Free PMC article.

7

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, Hughes TR. Berger MF, et al. Among authors: bulyk ml. Cell. 2008 Jun 27;133(7):1266-76. doi: 10.1016/j.cell.2008.05.024. Cell. 2008. PMID: 18585359 Free PMC article.

8

High-resolution DNA-binding specificity analysis of yeast transcription factors.

Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML. Zhu C, et al. Among authors: bulyk ml. Genome Res. 2009 Apr;19(4):556-66. doi: 10.1101/gr.090233.108. Epub 2009 Jan 21. Genome Res. 2009. PMID: 19158363 Free PMC article.

9

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.

Berger MF, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Protoc. 2009;4(3):393-411. doi: 10.1038/nprot.2008.195. Nat Protoc. 2009. PMID: 19265799 Free PMC article.

10

Diversity and complexity in DNA recognition by transcription factors.

Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, Jaeger SA, Chan ET, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang CF, Coburn D, Newburger DE, Morris Q, Hughes TR, Bulyk ML. Badis G, et al. Among authors: bulyk ml. Science. 2009 Jun 26;324(5935):1720-3. doi: 10.1126/science.1162327. Epub 2009 May 14. Science. 2009. PMID: 19443739 Free PMC article.

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