Bulyk ML - Search Results

1

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.

Santos MA, Turinsky AL, Ong S, Tsai J, Berger MF, Badis G, Talukder S, Gehrke AR, Bulyk ML, Hughes TR, Wodak SJ. Santos MA, et al. Among authors: bulyk ml. Nucleic Acids Res. 2010 Dec;38(22):7927-42. doi: 10.1093/nar/gkq714. Epub 2010 Aug 12. Nucleic Acids Res. 2010. PMID: 20705649 Free PMC article.

2

MORF and MOZ acetyltransferases target unmethylated CpG islands through the winged helix domain.

Becht DC, Klein BJ, Kanai A, Jang SM, Cox KL, Zhou BR, Phanor SK, Zhang Y, Chen RW, Ebmeier CC, Lachance C, Galloy M, Fradet-Turcotte A, Bulyk ML, Bai Y, Poirier MG, Côté J, Yokoyama A, Kutateladze TG. Becht DC, et al. Among authors: bulyk ml. Nat Commun. 2023 Feb 8;14(1):697. doi: 10.1038/s41467-023-36368-5. Nat Commun. 2023. PMID: 36754959 Free PMC article.

3

Blood cell traits' GWAS loci colocalization with variation in PU.1 genomic occupancy prioritizes causal noncoding regulatory variants.

Jeong R, Bulyk ML. Jeong R, et al. Among authors: bulyk ml. Cell Genom. 2023 May 17;3(7):100327. doi: 10.1016/j.xgen.2023.100327. eCollection 2023 Jul 12. Cell Genom. 2023. PMID: 37492098 Free PMC article.

4

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.

Bulyk ML, Johnson PL, Church GM. Bulyk ML, et al. Nucleic Acids Res. 2002 Mar 1;30(5):1255-61. doi: 10.1093/nar/30.5.1255. Nucleic Acids Res. 2002. PMID: 11861919 Free PMC article.

5

Additivity in protein-DNA interactions: how good an approximation is it?

Benos PV, Bulyk ML, Stormo GD. Benos PV, et al. Among authors: bulyk ml. Nucleic Acids Res. 2002 Oct 15;30(20):4442-51. doi: 10.1093/nar/gkf578. Nucleic Acids Res. 2002. PMID: 12384591 Free PMC article.

6

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Mukherjee S, et al. Among authors: bulyk ml. Nat Genet. 2004 Dec;36(12):1331-9. doi: 10.1038/ng1473. Epub 2004 Nov 14. Nat Genet. 2004. PMID: 15543148 Free PMC article.

7

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.

Berger MF, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Methods Mol Biol. 2006;338:245-60. doi: 10.1385/1-59745-097-9:245. Methods Mol Biol. 2006. PMID: 16888363 Free PMC article.

8

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.

9

Inferring condition-specific transcription factor function from DNA binding and gene expression data.

McCord RP, Berger MF, Philippakis AA, Bulyk ML. McCord RP, et al. Among authors: bulyk ml. Mol Syst Biol. 2007;3:100. doi: 10.1038/msb4100140. Epub 2007 Apr 17. Mol Syst Biol. 2007. PMID: 17437025 Free PMC article.

10

Microarray analyses of newborn mouse ovaries lacking Nobox.

Choi Y, Qin Y, Berger MF, Ballow DJ, Bulyk ML, Rajkovic A. Choi Y, et al. Among authors: bulyk ml. Biol Reprod. 2007 Aug;77(2):312-9. doi: 10.1095/biolreprod.107.060459. Epub 2007 May 9. Biol Reprod. 2007. PMID: 17494914

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