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Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain.
Yang X, Noyes NR, Doster E, Martin JN, Linke LM, Magnuson RJ, Yang H, Geornaras I, Woerner DR, Jones KL, Ruiz J, Boucher C, Morley PS, Belk KE. Yang X, et al. Among authors: boucher c. Appl Environ Microbiol. 2016 Apr 4;82(8):2433-2443. doi: 10.1128/AEM.00078-16. Print 2016 Apr. Appl Environ Microbiol. 2016. PMID: 26873315 Free PMC article.
Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Among authors: boucher c. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period.
Doster E, Rovira P, Noyes NR, Burgess BA, Yang X, Weinroth MD, Lakin SM, Dean CJ, Linke L, Magnuson R, Jones KI, Boucher C, Ruiz J, Belk KE, Morley PS. Doster E, et al. Among authors: boucher c. Front Microbiol. 2018 Jul 30;9:1715. doi: 10.3389/fmicb.2018.01715. eCollection 2018. Front Microbiol. 2018. PMID: 30105011 Free PMC article.
Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production Systems.
Rovira P, McAllister T, Lakin SM, Cook SR, Doster E, Noyes NR, Weinroth MD, Yang X, Parker JK, Boucher C, Booker CW, Woerner DR, Belk KE, Morley PS. Rovira P, et al. Among authors: boucher c. Front Microbiol. 2019 Sep 4;10:1980. doi: 10.3389/fmicb.2019.01980. eCollection 2019. Front Microbiol. 2019. PMID: 31555225 Free PMC article.
A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification.
Doster E, Rovira P, Noyes NR, Burgess BA, Yang X, Weinroth MD, Linke L, Magnuson R, Boucher C, Belk KE, Morley PS. Doster E, et al. Among authors: boucher c. Front Microbiol. 2019 Nov 1;10:2499. doi: 10.3389/fmicb.2019.02499. eCollection 2019. Front Microbiol. 2019. PMID: 31736924 Free PMC article.
Metagenome SNP calling via read-colored de Bruijn graphs.
Alipanahi B, Muggli MD, Jundi M, Noyes NR, Boucher C. Alipanahi B, et al. Among authors: boucher c. Bioinformatics. 2021 Apr 1;36(22-23):5275-5281. doi: 10.1093/bioinformatics/btaa081. Bioinformatics. 2021. PMID: 32049324 Free PMC article.
839 results