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Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide.
Sherwood AV, Rivera-Rangel LR, Ryberg LA, Larsen HS, Anker KM, Costa R, Vågbø CB, Jakljevič E, Pham LV, Fernandez-Antunez C, Indrisiunaite G, Podolska-Charlery A, Grothen JER, Langvad NW, Fossat N, Offersgaard A, Al-Chaer A, Nielsen L, Kuśnierczyk A, Sølund C, Weis N, Gottwein JM, Holmbeck K, Bottaro S, Ramirez S, Bukh J, Scheel TKH, Vinther J. Sherwood AV, et al. Among authors: bottaro s. Nature. 2023 Jul;619(7971):811-818. doi: 10.1038/s41586-023-06301-3. Epub 2023 Jul 5. Nature. 2023. PMID: 37407817
Discovering functionally important sites in proteins.
Cagiada M, Bottaro S, Lindemose S, Schenstrøm SM, Stein A, Hartmann-Petersen R, Lindorff-Larsen K. Cagiada M, et al. Among authors: bottaro s. Nat Commun. 2023 Jul 13;14(1):4175. doi: 10.1038/s41467-023-39909-0. Nat Commun. 2023. PMID: 37443362 Free PMC article.
Mapping the Universe of RNA Tetraloop Folds.
Bottaro S, Lindorff-Larsen K. Bottaro S, et al. Biophys J. 2017 Jul 25;113(2):257-267. doi: 10.1016/j.bpj.2017.06.011. Epub 2017 Jun 30. Biophys J. 2017. PMID: 28673616 Free PMC article.
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.
Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. Among authors: bottaro s. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610
An efficient null model for conformational fluctuations in proteins.
Harder T, Borg M, Bottaro S, Boomsma W, Olsson S, Ferkinghoff-Borg J, Hamelryck T. Harder T, et al. Among authors: bottaro s. Structure. 2012 Jun 6;20(6):1028-39. doi: 10.1016/j.str.2012.03.020. Epub 2012 May 10. Structure. 2012. PMID: 22578545 Free article.
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Šponer J, Bussi G, Krepl M, Banáš P, Bottaro S, Cunha RA, Gil-Ley A, Pinamonti G, Poblete S, Jurečka P, Walter NG, Otyepka M. Šponer J, et al. Among authors: bottaro s. Chem Rev. 2018 Apr 25;118(8):4177-4338. doi: 10.1021/acs.chemrev.7b00427. Epub 2018 Jan 3. Chem Rev. 2018. PMID: 29297679 Free PMC article. Review.
64 results