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Comparison of automated crystallographic model-building pipelines.
Alharbi E, Bond PS, Calinescu R, Cowtan K. Alharbi E, et al. Among authors: bond ps. Acta Crystallogr D Struct Biol. 2019 Dec 1;75(Pt 12):1119-1128. doi: 10.1107/S2059798319014918. Epub 2019 Nov 22. Acta Crystallogr D Struct Biol. 2019. PMID: 31793905 Free article.
Shift-field refinement of macromolecular atomic models.
Cowtan K, Metcalfe S, Bond P. Cowtan K, et al. Acta Crystallogr D Struct Biol. 2020 Dec 1;76(Pt 12):1192-1200. doi: 10.1107/S2059798320013170. Epub 2020 Nov 19. Acta Crystallogr D Struct Biol. 2020. PMID: 33263325 Free PMC article.
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA Jr, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W. Lawson CL, et al. Nat Methods. 2021 Feb;18(2):156-164. doi: 10.1038/s41592-020-01051-w. Epub 2021 Feb 4. Nat Methods. 2021. PMID: 33542514 Free PMC article.
Online carbohydrate 3D structure validation with the Privateer web app.
Dialpuri JS, Bagdonas H, Schofield LC, Pham PT, Holland L, Bond PS, Sánchez Rodríguez F, McNicholas SJ, Agirre J. Dialpuri JS, et al. Among authors: bond ps. Acta Crystallogr F Struct Biol Commun. 2024 Feb 1;80(Pt 2):30-35. doi: 10.1107/S2053230X24000359. Epub 2024 Jan 24. Acta Crystallogr F Struct Biol Commun. 2024. PMID: 38265073 Free PMC article.
Design and Synthesis of 56 Shape-Diverse 3D Fragments.
Downes TD, Jones SP, Klein HF, Wheldon MC, Atobe M, Bond PS, Firth JD, Chan NS, Waddelove L, Hubbard RE, Blakemore DC, De Fusco C, Roughley SD, Vidler LR, Whatton MA, Woolford AJ, Wrigley GL, O'Brien P. Downes TD, et al. Among authors: bond ps. Chemistry. 2020 Jul 22;26(41):8969-8975. doi: 10.1002/chem.202001123. Epub 2020 Jul 8. Chemistry. 2020. PMID: 32315100 Free PMC article.
16 results