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The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.
Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA. Fernandez-Pozo N, et al. Among authors: bombarely a. Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195. Epub 2014 Nov 26. Nucleic Acids Res. 2015. PMID: 25428362 Free PMC article.
Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.
Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Pöggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C. Bombarely A, et al. Nat Plants. 2016 May 27;2(6):16074. doi: 10.1038/nplants.2016.74. Nat Plants. 2016. PMID: 27255838 Free article.
A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency.
Edwards KD, Fernandez-Pozo N, Drake-Stowe K, Humphry M, Evans AD, Bombarely A, Allen F, Hurst R, White B, Kernodle SP, Bromley JR, Sanchez-Tamburrino JP, Lewis RS, Mueller LA. Edwards KD, et al. Among authors: bombarely a. BMC Genomics. 2017 Jun 19;18(1):448. doi: 10.1186/s12864-017-3791-6. BMC Genomics. 2017. PMID: 28625162 Free PMC article.
Transposon activation is a major driver in the genome evolution of cultivated olive trees (Olea europaea L.).
Jiménez-Ruiz J, Ramírez-Tejero JA, Fernández-Pozo N, Leyva-Pérez MO, Yan H, Rosa R, Belaj A, Montes E, Rodríguez-Ariza MO, Navarro F, Barroso JB, Beuzón CR, Valpuesta V, Bombarely A, Luque F. Jiménez-Ruiz J, et al. Among authors: bombarely a. Plant Genome. 2020 Mar;13(1):e20010. doi: 10.1002/tpg2.20010. Epub 2020 Mar 27. Plant Genome. 2020. PMID: 33016633 Free article.
The era of reference genomes in conservation genomics.
Formenti G, Theissinger K, Fernandes C, Bista I, Bombarely A, Bleidorn C, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, Ruiz-López MJ, Svardal H, Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Mazzoni CJ, Jarvis ED, Bálint M; European Reference Genome Atlas (ERGA) Consortium. Formenti G, et al. Among authors: bombarely a. Trends Ecol Evol. 2022 Mar;37(3):197-202. doi: 10.1016/j.tree.2021.11.008. Epub 2022 Jan 24. Trends Ecol Evol. 2022. PMID: 35086739 Free article.
TobEA: an atlas of tobacco gene expression from seed to senescence.
Edwards KD, Bombarely A, Story GW, Allen F, Mueller LA, Coates SA, Jones L. Edwards KD, et al. Among authors: bombarely a. BMC Genomics. 2010 Feb 26;11:142. doi: 10.1186/1471-2164-11-142. BMC Genomics. 2010. PMID: 20187945 Free PMC article.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.
Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA. Bombarely A, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. doi: 10.1093/nar/gkq866. Epub 2010 Oct 8. Nucleic Acids Res. 2011. PMID: 20935049 Free PMC article.
81 results