Bolouri H - Search Results

1

Integrative network modeling reveals mechanisms underlying T cell exhaustion.

Bolouri H, Young M, Beilke J, Johnson R, Fox B, Huang L, Santini CC, Hill CM, Vries AVV, Shannon PT, Dervan A, Sivakumar P, Trotter M, Bassett D, Ratushny A. Bolouri H, et al. Sci Rep. 2020 Feb 5;10(1):1915. doi: 10.1038/s41598-020-58600-8. Sci Rep. 2020. PMID: 32024856 Free PMC article.

2

Analysis and visualization of linked molecular and clinical cancer data by using Oncoscape.

McFerrin LG, Zager M, Zhang J, Krenn G, McDermott R, Horse-Grant D, Silgard E, Colevas K, Shannon P, Bolouri H, Holland EC. McFerrin LG, et al. Among authors: bolouri h. Nat Genet. 2018 Sep;50(9):1203-1204. doi: 10.1038/s41588-018-0208-7. Nat Genet. 2018. PMID: 30158685 No abstract available.

3

Variability in estimated gene expression among commonly used RNA-seq pipelines.

Arora S, Pattwell SS, Holland EC, Bolouri H. Arora S, et al. Among authors: bolouri h. Sci Rep. 2020 Feb 17;10(1):2734. doi: 10.1038/s41598-020-59516-z. Sci Rep. 2020. PMID: 32066774 Free PMC article.

4

Modeling genomic regulatory networks with big data.

Bolouri H. Bolouri H. Trends Genet. 2014 May;30(5):182-91. doi: 10.1016/j.tig.2014.02.005. Epub 2014 Mar 13. Trends Genet. 2014. PMID: 24630831 Review.

5

Modeling transcriptional regulatory networks.

Bolouri H, Davidson EH. Bolouri H, et al. Bioessays. 2002 Dec;24(12):1118-29. doi: 10.1002/bies.10189. Bioessays. 2002. PMID: 12447977 Review.

6

Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics.

Bolouri H, Davidson EH. Bolouri H, et al. Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9371-6. doi: 10.1073/pnas.1533293100. Epub 2003 Jul 25. Proc Natl Acad Sci U S A. 2003. PMID: 12883007 Free PMC article.

7

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

Gilchrist M, Thorsson V, Li B, Rust AG, Korb M, Roach JC, Kennedy K, Hai T, Bolouri H, Aderem A. Gilchrist M, et al. Among authors: bolouri h. Nature. 2006 May 11;441(7090):173-8. doi: 10.1038/nature04768. Nature. 2006. PMID: 16688168

8

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks.

Longabaugh WJ, Davidson EH, Bolouri H. Longabaugh WJ, et al. Among authors: bolouri h. Biochim Biophys Acta. 2009 Apr;1789(4):363-74. doi: 10.1016/j.bbagrm.2008.07.014. Epub 2008 Aug 6. Biochim Biophys Acta. 2009. PMID: 18757046 Free PMC article. Review.

9

A B-cell developmental gene regulatory network is activated in infant AML.

Bolouri H, Ries R, Pardo L, Hylkema T, Zhou W, Smith JL, Leonti A, Loken M, Farrar JE, Triche TJ Jr, Meshinchi S. Bolouri H, et al. PLoS One. 2021 Nov 18;16(11):e0259197. doi: 10.1371/journal.pone.0259197. eCollection 2021. PLoS One. 2021. PMID: 34793513 Free PMC article.

10

Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast.

Ramsey SA, Smith JJ, Orrell D, Marelli M, Petersen TW, de Atauri P, Bolouri H, Aitchison JD. Ramsey SA, et al. Among authors: bolouri h. Nat Genet. 2006 Sep;38(9):1082-7. doi: 10.1038/ng1869. Epub 2006 Aug 27. Nat Genet. 2006. PMID: 16936734

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