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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Moreno XC, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Yoldaş AK, Kyoda K, de la Villegeorges ALT, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. Moore J, et al. Among authors: bogovic j. bioRxiv [Preprint]. 2023 May 7:2023.02.17.528834. doi: 10.1101/2023.02.17.528834. bioRxiv. 2023. PMID: 36865282 Free PMC article. Updated. Preprint.
An unbiased template of the Drosophila brain and ventral nerve cord.
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner G, Nern A, Colonell J, Malkesman O, Ito K, Saalfeld S. Bogovic JA, et al. PLoS One. 2020 Dec 31;15(12):e0236495. doi: 10.1371/journal.pone.0236495. eCollection 2020. PLoS One. 2020. PMID: 33382698 Free PMC article.
Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Bharathan NK, Giang W, Hoffman CL, Aaron JS, Khuon S, Chew TL, Preibisch S, Trautman ET, Heinrich L, Bogovic J, Bennett D, Ackerman D, Park W, Petruncio A, Weigel AV, Saalfeld S; COSEM Project Team; Wayne Vogl A, Stahley SN, Kowalczyk AP. Bharathan NK, et al. Among authors: bogovic j. Nat Cell Biol. 2023 Jun;25(6):823-835. doi: 10.1038/s41556-023-01154-4. Epub 2023 Jun 8. Nat Cell Biol. 2023. PMID: 37291267 Free PMC article.
OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. Moore J, et al. Among authors: bogovic j. Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10. Histochem Cell Biol. 2023. PMID: 37428210 Free PMC article.
Author Correction: Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Bharathan NK, Giang W, Hoffman CL, Aaron JS, Khuon S, Chew TL, Preibisch S, Trautman ET, Heinrich L, Bogovic J, Bennett D, Ackerman D, Park W, Petruncio A, Weigel AV, Saalfeld S; COSEM Project Team; Wayne Vogl A, Stahley SN, Kowalczyk AP. Bharathan NK, et al. Among authors: bogovic j. Nat Cell Biol. 2024 Apr;26(4):660. doi: 10.1038/s41556-024-01376-0. Nat Cell Biol. 2024. PMID: 38347183 No abstract available.
Connectome-driven neural inventory of a complete visual system.
Nern A, Lösche F, Takemura SY, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC, Koskela S, Longden KD, Lu Z, Preibisch S, Qiu W, Rogers EM, Seenivasan P, Zhao A, Bogovic J, Canino BS, Clements J, Cook M, Finley-May S, Flynn MA, Hameed I, Hayworth KJ, Hopkins GP, Hubbard PM, Katz WT, Kovalyak J, Lauchie SA, Leonard M, Lohff A, Maldonado CA, Mooney C, Okeoma N, Olbris DJ, Ordish C, Paterson T, Phillips EM, Pietzsch T, Salinas JR, Rivlin PK, Scott AL, Scuderi LA, Takemura S, Talebi I, Thomson A, Trautman ET, Umayam L, Walsh C, Walsh JJ, Shan Xu C, Yakal EA, Yang T, Zhao T, Funke J, George R, Hess HF, Jefferis GS, Knecht C, Korff W, Plaza SM, Romani S, Saalfeld S, Scheffer LK, Berg S, Rubin GM, Reiser MB. Nern A, et al. Among authors: bogovic j. bioRxiv [Preprint]. 2024 Apr 18:2024.04.16.589741. doi: 10.1101/2024.04.16.589741. bioRxiv. 2024. PMID: 38659887 Free PMC article. Preprint.
Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy.
Lillvis JL, Otsuna H, Ding X, Pisarev I, Kawase T, Colonell J, Rokicki K, Goina C, Gao R, Hu A, Wang K, Bogovic J, Milkie DE, Meienberg L, Mensh BD, Boyden ES, Saalfeld S, Tillberg PW, Dickson BJ. Lillvis JL, et al. Among authors: bogovic j. Elife. 2022 Oct 26;11:e81248. doi: 10.7554/eLife.81248. Elife. 2022. PMID: 36286237 Free PMC article.
A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.
Zheng Z, Lauritzen JS, Perlman E, Robinson CG, Nichols M, Milkie D, Torrens O, Price J, Fisher CB, Sharifi N, Calle-Schuler SA, Kmecova L, Ali IJ, Karsh B, Trautman ET, Bogovic JA, Hanslovsky P, Jefferis GSXE, Kazhdan M, Khairy K, Saalfeld S, Fetter RD, Bock DD. Zheng Z, et al. Among authors: bogovic ja. Cell. 2018 Jul 26;174(3):730-743.e22. doi: 10.1016/j.cell.2018.06.019. Epub 2018 Jul 19. Cell. 2018. PMID: 30033368 Free PMC article.
Whole-cell organelle segmentation in volume electron microscopy.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, Weigel AV; COSEM Project Team. Heinrich L, et al. Among authors: bogovic j. Nature. 2021 Nov;599(7883):141-146. doi: 10.1038/s41586-021-03977-3. Epub 2021 Oct 6. Nature. 2021. PMID: 34616042
48 results