Boden M - Search Results

1

MEME SUITE: tools for motif discovery and searching.

Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. Bailey TL, et al. Among authors: boden m. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. doi: 10.1093/nar/gkp335. Epub 2009 May 20. Nucleic Acids Res. 2009. PMID: 19458158 Free PMC article.

2

Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures.

Bodén M, Yuan Z, Bailey TL. Bodén M, et al. BMC Bioinformatics. 2006 Feb 14;7:68. doi: 10.1186/1471-2105-7-68. BMC Bioinformatics. 2006. PMID: 16478545 Free PMC article.

3

Identifying sequence regions undergoing conformational change via predicted continuum secondary structure.

Bodén M, Bailey TL. Bodén M, et al. Bioinformatics. 2006 Aug 1;22(15):1809-14. doi: 10.1093/bioinformatics/btl198. Epub 2006 May 23. Bioinformatics. 2006. PMID: 16720586

4

STAR: predicting recombination sites from amino acid sequence.

Bauer DC, Bodén M, Thier R, Gillam EM. Bauer DC, et al. Among authors: boden m. BMC Bioinformatics. 2006 Oct 8;7:437. doi: 10.1186/1471-2105-7-437. BMC Bioinformatics. 2006. PMID: 17026775 Free PMC article.

5

Associating transcription factor-binding site motifs with target GO terms and target genes.

Bodén M, Bailey TL. Bodén M, et al. Nucleic Acids Res. 2008 Jul;36(12):4108-17. doi: 10.1093/nar/gkn374. Epub 2008 Jun 10. Nucleic Acids Res. 2008. PMID: 18544606 Free PMC article.

6

In silico characterization of protein chimeras: relating sequence and function within the same fold.

Buske FA, Their R, Gillam EM, Bodén M. Buske FA, et al. Among authors: boden m. Proteins. 2009 Oct;77(1):111-20. doi: 10.1002/prot.22422. Proteins. 2009. PMID: 19415757

7

Assigning roles to DNA regulatory motifs using comparative genomics.

Buske FA, Bodén M, Bauer DC, Bailey TL. Buske FA, et al. Among authors: boden m. Bioinformatics. 2010 Apr 1;26(7):860-6. doi: 10.1093/bioinformatics/btq049. Epub 2010 Feb 10. Bioinformatics. 2010. PMID: 20147307 Free PMC article.

8

The value of position-specific priors in motif discovery using MEME.

Bailey TL, Bodén M, Whitington T, Machanick P. Bailey TL, et al. Among authors: boden m. BMC Bioinformatics. 2010 Apr 9;11:179. doi: 10.1186/1471-2105-11-179. BMC Bioinformatics. 2010. PMID: 20380693 Free PMC article.

9

A Bayesian network model of proteins' association with promyelocytic leukemia (PML) nuclear bodies.

Bodén M, Dellaire G, Burrage K, Bailey TL. Bodén M, et al. J Comput Biol. 2010 Apr;17(4):617-30. doi: 10.1089/cmb.2009.0140. J Comput Biol. 2010. PMID: 20426694

10

A probabilistic model of nuclear import of proteins.

Mehdi AM, Sehgal MS, Kobe B, Bailey TL, Bodén M. Mehdi AM, et al. Among authors: boden m. Bioinformatics. 2011 May 1;27(9):1239-46. doi: 10.1093/bioinformatics/btr121. Epub 2011 Mar 3. Bioinformatics. 2011. PMID: 21372083 Free PMC article.

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