Bodén M - Search Results

1

Selective requirement for polycomb repressor complex 2 in the generation of specific hypothalamic neuronal subtypes.

Yaghmaeian Salmani B, Balderson B, Bauer S, Ekman H, Starkenberg A, Perlmann T, Piper M, Bodén M, Thor S. Yaghmaeian Salmani B, et al. Among authors: boden m. Development. 2022 Mar 1;149(5):dev200076. doi: 10.1242/dev.200076. Epub 2022 Mar 4. Development. 2022. PMID: 35245348 Free PMC article.

2

Cell-type-specific expression of NFIX in the developing and adult cerebellum.

Fraser J, Essebier A, Gronostajski RM, Boden M, Wainwright BJ, Harvey TJ, Piper M. Fraser J, et al. Among authors: boden m. Brain Struct Funct. 2017 Jul;222(5):2251-2270. doi: 10.1007/s00429-016-1340-8. Epub 2016 Nov 23. Brain Struct Funct. 2017. PMID: 27878595

3

Bioinformatics approaches to predict target genes from transcription factor binding data.

Essebier A, Lamprecht M, Piper M, Bodén M. Essebier A, et al. Among authors: boden m. Methods. 2017 Dec 1;131:111-119. doi: 10.1016/j.ymeth.2017.09.001. Epub 2017 Sep 7. Methods. 2017. PMID: 28890129 Review.

4

Granule neuron precursor cell proliferation is regulated by NFIX and intersectin 1 during postnatal cerebellar development.

Fraser J, Essebier A, Brown AS, Davila RA, Sengar AS, Tu Y, Ensbey KS, Day BW, Scott MP, Gronostajski RM, Wainwright BJ, Boden M, Harvey TJ, Piper M. Fraser J, et al. Among authors: boden m. Brain Struct Funct. 2019 Mar;224(2):811-827. doi: 10.1007/s00429-018-1801-3. Epub 2018 Dec 3. Brain Struct Funct. 2019. PMID: 30511336

5

Common Regulatory Targets of NFIA, NFIX and NFIB during Postnatal Cerebellar Development.

Fraser J, Essebier A, Brown AS, Davila RA, Harkins D, Zalucki O, Shapiro LP, Penzes P, Wainwright BJ, Scott MP, Gronostajski RM, Bodén M, Piper M, Harvey TJ. Fraser J, et al. Among authors: boden m. Cerebellum. 2020 Feb;19(1):89-101. doi: 10.1007/s12311-019-01089-3. Cerebellum. 2020. PMID: 31838646 Free PMC article.

6

Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity.

Shim WJ, Sinniah E, Xu J, Vitrinel B, Alexanian M, Andreoletti G, Shen S, Sun Y, Balderson B, Boix C, Peng G, Jing N, Wang Y, Kellis M, Tam PPL, Smith A, Piper M, Christiaen L, Nguyen Q, Bodén M, Palpant NJ. Shim WJ, et al. Among authors: boden m. Cell Syst. 2020 Dec 16;11(6):625-639.e13. doi: 10.1016/j.cels.2020.11.001. Epub 2020 Dec 4. Cell Syst. 2020. PMID: 33278344 Free PMC article.

7

ChIP-R: Assembling reproducible sets of ChIP-seq and ATAC-seq peaks from multiple replicates.

Newell R, Pienaar R, Balderson B, Piper M, Essebier A, Bodén M. Newell R, et al. Among authors: boden m. Genomics. 2021 Jul;113(4):1855-1866. doi: 10.1016/j.ygeno.2021.04.026. Epub 2021 Apr 18. Genomics. 2021. PMID: 33878366 Free article.

8

Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype.

Kojic M, Gawda T, Gaik M, Begg A, Salerno-Kochan A, Kurniawan ND, Jones A, Drożdżyk K, Kościelniak A, Chramiec-Głąbik A, Hediyeh-Zadeh S, Kasherman M, Shim WJ, Sinniah E, Genovesi LA, Abrahamsen RK, Fenger CD, Madsen CG, Cohen JS, Fatemi A, Stark Z, Lunke S, Lee J, Hansen JK, Boxill MF, Keren B, Marey I, Saenz MS, Brown K, Alexander SA, Mureev S, Batzilla A, Davis MJ, Piper M, Bodén M, Burne THJ, Palpant NJ, Møller RS, Glatt S, Wainwright BJ. Kojic M, et al. Among authors: boden m. Nat Commun. 2021 May 11;12(1):2678. doi: 10.1038/s41467-021-22888-5. Nat Commun. 2021. PMID: 33976153 Free PMC article.

9

Variational autoencoding of gene landscapes during mouse CNS development uncovers layered roles of Polycomb Repressor Complex 2.

Mora A, Rakar J, Cobeta IM, Salmani BY, Starkenberg A, Thor S, Bodén M. Mora A, et al. Among authors: boden m. Nucleic Acids Res. 2022 Feb 22;50(3):1280-1296. doi: 10.1093/nar/gkac006. Nucleic Acids Res. 2022. PMID: 35048973 Free PMC article.

10

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP).

Foley G, Mora A, Ross CM, Bottoms S, Sützl L, Lamprecht ML, Zaugg J, Essebier A, Balderson B, Newell R, Thomson RES, Kobe B, Barnard RT, Guddat L, Schenk G, Carsten J, Gumulya Y, Rost B, Haltrich D, Sieber V, Gillam EMJ, Bodén M. Foley G, et al. Among authors: boden m. PLoS Comput Biol. 2022 Oct 24;18(10):e1010633. doi: 10.1371/journal.pcbi.1010633. eCollection 2022 Oct. PLoS Comput Biol. 2022. PMID: 36279274 Free PMC article.

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