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Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering.
Hiraga K, Mejzlik P, Marcisin M, Vostrosablin N, Gromek A, Arnold J, Wiewiora S, Svarba R, Prihoda D, Clarova K, Klempir O, Navratil J, Tupa O, Vazquez-Otero A, Walas MW, Holy L, Spale M, Kotowski J, Dzamba D, Temesi G, Russell JH, Marshall NM, Murphy GS, Bitton DA. Hiraga K, et al. Among authors: bitton da. ACS Synth Biol. 2021 Feb 19;10(2):357-370. doi: 10.1021/acssynbio.0c00542. Epub 2021 Jan 12. ACS Synth Biol. 2021. PMID: 33433999 Free article.
A deep learning genome-mining strategy for biosynthetic gene cluster prediction.
Hannigan GD, Prihoda D, Palicka A, Soukup J, Klempir O, Rampula L, Durcak J, Wurst M, Kotowski J, Chang D, Wang R, Piizzi G, Temesi G, Hazuda DJ, Woelk CH, Bitton DA. Hannigan GD, et al. Among authors: bitton da. Nucleic Acids Res. 2019 Oct 10;47(18):e110. doi: 10.1093/nar/gkz654. Nucleic Acids Res. 2019. PMID: 31400112 Free PMC article.
PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization.
Baylon JL, Ursu O, Muzdalo A, Wassermann AM, Adams GL, Spale M, Mejzlik P, Gromek A, Pisarenko V, Hancharyk D, Jenkins E, Bednar D, Chang C, Clarova K, Glick M, Bitton DA. Baylon JL, et al. Among authors: bitton da. J Chem Inf Model. 2022 Mar 14;62(5):1259-1267. doi: 10.1021/acs.jcim.1c01360. Epub 2022 Feb 22. J Chem Inf Model. 2022. PMID: 35192366
mRNAid, an open-source platform for therapeutic mRNA design and optimization strategies.
Vostrosablin N, Lim S, Gopal P, Brazdilova K, Parajuli S, Wei X, Gromek A, Prihoda D, Spale M, Muzdalo A, Greig J, Yeo C, Wardyn J, Mejzlik P, Henry B, Partridge AW, Bitton DA. Vostrosablin N, et al. Among authors: bitton da. NAR Genom Bioinform. 2024 Mar 12;6(1):lqae028. doi: 10.1093/nargab/lqae028. eCollection 2024 Mar. NAR Genom Bioinform. 2024. PMID: 38482061 Free PMC article.
The genomic and phenotypic diversity of Schizosaccharomyces pombe.
Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J. Jeffares DC, et al. Among authors: bitton da. Nat Genet. 2015 Mar;47(3):235-41. doi: 10.1038/ng.3215. Epub 2015 Feb 9. Nat Genet. 2015. PMID: 25665008 Free PMC article.
30 results