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Vision, challenges and opportunities for a Plant Cell Atlas.
Plant Cell Atlas Consortium; Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, Briggs SP, Brophy JA, Denolf P, Di Costanzo LF, Exposito-Alonso M, Giacomello S, Gomez-Cano F, Kaufmann K, Ko DK, Kumar S, Malkovskiy AV, Nakayama N, Obata T, Otegui MS, Palfalvi G, Quezada-Rodríguez EH, Singh R, Uhrig RG, Waese J, Van Wijk K, Wright RC, Ehrhardt DW, Birnbaum KD, Rhee SY. Plant Cell Atlas Consortium, et al. Among authors: birnbaum kd. Elife. 2021 Sep 7;10:e66877. doi: 10.7554/eLife.66877. Elife. 2021. PMID: 34491200 Free PMC article.
A map of cell type-specific auxin responses.
Bargmann BO, Vanneste S, Krouk G, Nawy T, Efroni I, Shani E, Choe G, Friml J, Bergmann DC, Estelle M, Birnbaum KD. Bargmann BO, et al. Among authors: birnbaum kd. Mol Syst Biol. 2013;9:688. doi: 10.1038/msb.2013.40. Mol Syst Biol. 2013. PMID: 24022006 Free PMC article.
Towards Building a Plant Cell Atlas.
Rhee SY, Birnbaum KD, Ehrhardt DW. Rhee SY, et al. Among authors: birnbaum kd. Trends Plant Sci. 2019 Apr;24(4):303-310. doi: 10.1016/j.tplants.2019.01.006. Epub 2019 Feb 16. Trends Plant Sci. 2019. PMID: 30777643 Free PMC article. Review.
Directions for research and training in plant omics: Big Questions and Big Data.
Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM. Argueso CT, et al. Among authors: birnbaum kd. Plant Direct. 2019 Apr 23;3(4):e00133. doi: 10.1002/pld3.133. eCollection 2019 Apr. Plant Direct. 2019. PMID: 31245771 Free PMC article.
First plant cell atlas workshop report.
Rice S, Fryer E, Ghosh Jha S, Malkovskiy A, Meyer H, Thomas J, Weizbauer R, Zhao K, Birnbaum K, Ehrhardt D, Wang Z, Rhee SY; Plant Cell Atlas Consortium. Rice S, et al. Plant Direct. 2020 Oct 15;4(10):e00271. doi: 10.1002/pld3.271. eCollection 2020 Oct. Plant Direct. 2020. PMID: 33083684 Free PMC article.
Advances and Opportunities in Single-Cell Transcriptomics for Plant Research.
Seyfferth C, Renema J, Wendrich JR, Eekhout T, Seurinck R, Vandamme N, Blob B, Saeys Y, Helariutta Y, Birnbaum KD, De Rybel B. Seyfferth C, et al. Among authors: birnbaum kd. Annu Rev Plant Biol. 2021 Jun 17;72:847-866. doi: 10.1146/annurev-arplant-081720-010120. Epub 2021 Mar 17. Annu Rev Plant Biol. 2021. PMID: 33730513 Free PMC article. Review.
First Plant Cell Atlas symposium report.
Rice SL, Lazarus E, Anderton C, Birnbaum K, Brophy J, Cole B, Dickel D, Ehrhardt D, Fahlgren N, Frank M, Haswell E, Huang SC, Leiboff S, Libault M, Otegui MS, Provart N, Uhrig RG, Rhee SY; Plant Cell Atlas Consortium. Rice SL, et al. Plant Direct. 2022 Jun 8;6(6):e406. doi: 10.1002/pld3.406. eCollection 2022 Jun. Plant Direct. 2022. PMID: 35774620 Free PMC article.
Ground tissue circuitry regulates organ complexity in maize and Setaria.
Ortiz-Ramírez C, Guillotin B, Xu X, Rahni R, Zhang S, Yan Z, Coqueiro Dias Araujo P, Demesa-Arevalo E, Lee L, Van Eck J, Gingeras TR, Jackson D, Gallagher KL, Birnbaum KD. Ortiz-Ramírez C, et al. Among authors: birnbaum kd. Science. 2021 Dec 3;374(6572):1247-1252. doi: 10.1126/science.abj2327. Epub 2021 Dec 2. Science. 2021. PMID: 34855479 Free PMC article.
66 results