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ProMod3-A versatile homology modelling toolbox.
Studer G, Tauriello G, Bienert S, Biasini M, Johner N, Schwede T. Studer G, et al. Among authors: bienert s. PLoS Comput Biol. 2021 Jan 28;17(1):e1008667. doi: 10.1371/journal.pcbi.1008667. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33507980 Free PMC article.
OpenStructure: an integrated software framework for computational structural biology.
Biasini M, Schmidt T, Bienert S, Mariani V, Studer G, Haas J, Johner N, Schenk AD, Philippsen A, Schwede T. Biasini M, et al. Among authors: bienert s. Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):701-9. doi: 10.1107/S0907444913007051. Epub 2013 Apr 19. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23633579 Free PMC article.
The SWISS-MODEL Repository-new features and functionality.
Bienert S, Waterhouse A, de Beer TA, Tauriello G, Studer G, Bordoli L, Schwede T. Bienert S, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D313-D319. doi: 10.1093/nar/gkw1132. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899672 Free PMC article.
SWISS-MODEL: homology modelling of protein structures and complexes.
Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, Lepore R, Schwede T. Waterhouse A, et al. Among authors: bienert s. Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303. doi: 10.1093/nar/gky427. Nucleic Acids Res. 2018. PMID: 29788355 Free PMC article.
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.
Varadi M, Nair S, Sillitoe I, Tauriello G, Anyango S, Bienert S, Borges C, Deshpande M, Green T, Hassabis D, Hatos A, Hegedus T, Hekkelman ML, Joosten R, Jumper J, Laydon A, Molodenskiy D, Piovesan D, Salladini E, Salzberg SL, Sommer MJ, Steinegger M, Suhajda E, Svergun D, Tenorio-Ku L, Tosatto S, Tunyasuvunakool K, Waterhouse AM, Žídek A, Schwede T, Orengo C, Velankar S. Varadi M, et al. Among authors: bienert s. Gigascience. 2022 Nov 30;11:giac118. doi: 10.1093/gigascience/giac118. Gigascience. 2022. PMID: 36448847 Free PMC article.
ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.
Vallat B, Tauriello G, Bienert S, Haas J, Webb BM, Žídek A, Zheng W, Peisach E, Piehl DW, Anischanka I, Sillitoe I, Tolchard J, Varadi M, Baker D, Orengo C, Zhang Y, Hoch JC, Kurisu G, Patwardhan A, Velankar S, Burley SK, Sali A, Schwede T, Berman HM, Westbrook JD. Vallat B, et al. Among authors: bienert s. J Mol Biol. 2023 Jul 15;435(14):168021. doi: 10.1016/j.jmb.2023.168021. Epub 2023 Feb 23. J Mol Biol. 2023. PMID: 36828268 Free article.
The structure assessment web server: for proteins, complexes and more.
Waterhouse AM, Studer G, Robin X, Bienert S, Tauriello G, Schwede T. Waterhouse AM, et al. Among authors: bienert s. Nucleic Acids Res. 2024 Apr 18:gkae270. doi: 10.1093/nar/gkae270. Online ahead of print. Nucleic Acids Res. 2024. PMID: 38634802
17 results