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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. Moore J, et al. Among authors: besson s. Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10. Histochem Cell Biol. 2023. PMID: 37428210 Free PMC article.
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
Moore J, Allan C, Besson S, Burel JM, Diel E, Gault D, Kozlowski K, Lindner D, Linkert M, Manz T, Moore W, Pape C, Tischer C, Swedlow JR. Moore J, et al. Among authors: besson s. Nat Methods. 2021 Dec;18(12):1496-1498. doi: 10.1038/s41592-021-01326-w. Epub 2021 Nov 29. Nat Methods. 2021. PMID: 34845388 Free PMC article.
Bringing Open Data to Whole Slide Imaging.
Besson S, Leigh R, Linkert M, Allan C, Burel JM, Carroll M, Gault D, Gozim R, Li S, Lindner D, Moore J, Moore W, Walczysko P, Wong F, Swedlow JR. Besson S, et al. Digit Pathol (2019). 2019 Apr;2019:3-10. doi: 10.1007/978-3-030-23937-4_1. Epub 2019 Jul 3. Digit Pathol (2019). 2019. PMID: 31579322 Free PMC article.
Publishing and sharing multi-dimensional image data with OMERO.
Burel JM, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Li S, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Tarkowska A, Walczysko P, Allan C, Moore J, Swedlow JR. Burel JM, et al. Among authors: besson s. Mamm Genome. 2015 Oct;26(9-10):441-7. doi: 10.1007/s00335-015-9587-6. Epub 2015 Jul 30. Mamm Genome. 2015. PMID: 26223880 Free PMC article.
Metadata management for high content screening in OMERO.
Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR. Li S, et al. Among authors: besson s. Methods. 2016 Mar 1;96:27-32. doi: 10.1016/j.ymeth.2015.10.006. Epub 2015 Oct 22. Methods. 2016. PMID: 26476368 Free PMC article.
Community standards for open cell migration data.
Gonzalez-Beltran AN, Masuzzo P, Ampe C, Bakker GJ, Besson S, Eibl RH, Friedl P, Gunzer M, Kittisopikul M, Dévédec SEL, Leo S, Moore J, Paran Y, Prilusky J, Rocca-Serra P, Roudot P, Schuster M, Sergeant G, Strömblad S, Swedlow JR, van Erp M, Van Troys M, Zaritsky A, Sansone SA, Martens L. Gonzalez-Beltran AN, et al. Among authors: besson s. Gigascience. 2020 May 1;9(5):giaa041. doi: 10.1093/gigascience/giaa041. Gigascience. 2020. PMID: 32396199 Free PMC article.
Length-dependent anisotropic scaling of spindle shape.
Young S, Besson S, Welburn JP. Young S, et al. Among authors: besson s. Biol Open. 2014 Nov 21;3(12):1217-23. doi: 10.1242/bio.201410363. Biol Open. 2014. PMID: 25416062 Free PMC article.
61 results