Bergmann FT - Search Results

1

Inspecting the Solution Space of Genome-Scale Metabolic Models.

Loghmani SB, Veith N, Sahle S, Bergmann FT, Olivier BG, Kummer U. Loghmani SB, et al. Among authors: bergmann ft. Metabolites. 2022 Jan 5;12(1):43. doi: 10.3390/metabo12010043. Metabolites. 2022. PMID: 35050165 Free PMC article.

2

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.

Waltemath D, Adams R, Bergmann FT, Hucka M, Kolpakov F, Miller AK, Moraru II, Nickerson D, Sahle S, Snoep JL, Le Novère N. Waltemath D, et al. Among authors: bergmann ft. BMC Syst Biol. 2011 Dec 15;5:198. doi: 10.1186/1752-0509-5-198. BMC Syst Biol. 2011. PMID: 22172142 Free PMC article.

3

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

Bergmann FT, Adams R, Moodie S, Cooper J, Glont M, Golebiewski M, Hucka M, Laibe C, Miller AK, Nickerson DP, Olivier BG, Rodriguez N, Sauro HM, Scharm M, Soiland-Reyes S, Waltemath D, Yvon F, Le Novère N. Bergmann FT, et al. BMC Bioinformatics. 2014 Dec 14;15(1):369. doi: 10.1186/s12859-014-0369-z. BMC Bioinformatics. 2014. PMID: 25494900 Free PMC article.

4

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints.

Olivier BG, Bergmann FT. Olivier BG, et al. Among authors: bergmann ft. J Integr Bioinform. 2015 Sep 4;12(2):269. doi: 10.2390/biecoll-jib-2015-269. J Integr Bioinform. 2015. PMID: 26528567

5

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.

Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ. Hucka M, et al. Among authors: bergmann ft. J Integr Bioinform. 2015 Sep 4;12(2):271. doi: 10.2390/biecoll-jib-2015-271. J Integr Bioinform. 2015. PMID: 26528569 Free PMC article.

6

Piecewise parameter estimation for stochastic models in COPASI.

Bergmann FT, Sahle S, Zimmer C. Bergmann FT, et al. Bioinformatics. 2016 May 15;32(10):1586-8. doi: 10.1093/bioinformatics/btv759. Epub 2016 Jan 18. Bioinformatics. 2016. PMID: 26787664 Free PMC article.

7

COPASI and its applications in biotechnology.

Bergmann FT, Hoops S, Klahn B, Kummer U, Mendes P, Pahle J, Sahle S. Bergmann FT, et al. J Biotechnol. 2017 Nov 10;261:215-220. doi: 10.1016/j.jbiotec.2017.06.1200. Epub 2017 Jun 24. J Biotechnol. 2017. PMID: 28655634 Free PMC article. Review.

8

Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis.

Großeholz R, Koh CC, Veith N, Fiedler T, Strauss M, Olivier B, Collins BC, Schubert OT, Bergmann F, Kreikemeyer B, Aebersold R, Kummer U. Großeholz R, et al. NPJ Syst Biol Appl. 2016 Sep 8;2:16017. doi: 10.1038/npjsba.2016.17. eCollection 2016. NPJ Syst Biol Appl. 2016. PMID: 28725473 Free PMC article.

9

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ. Hucka M, et al. Among authors: bergmann ft. J Integr Bioinform. 2018 Mar 9;15(1):20170081. doi: 10.1515/jib-2017-0081. J Integr Bioinform. 2018. PMID: 29522418 Free PMC article.

10

SBML Level 3 Package: Flux Balance Constraints version 2.

Olivier BG, Bergmann FT. Olivier BG, et al. Among authors: bergmann ft. J Integr Bioinform. 2018 Mar 9;15(1):20170082. doi: 10.1515/jib-2017-0082. J Integr Bioinform. 2018. PMID: 29522419 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

82 results

Search Page