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A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58.
Reid CJ, Cummins ML, Börjesson S, Brouwer MSM, Hasman H, Hammerum AM, Roer L, Hess S, Berendonk T, Nešporová K, Haenni M, Madec JY, Bethe A, Michael GB, Schink AK, Schwarz S, Dolejska M, Djordjevic SP. Reid CJ, et al. Among authors: berendonk t. Nat Commun. 2022 Feb 3;13(1):683. doi: 10.1038/s41467-022-28342-4. Nat Commun. 2022. PMID: 35115531 Free PMC article.
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.
Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G. Angers-Loustau A, et al. Among authors: berendonk t. F1000Res. 2018 Apr 13;7:ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018. F1000Res. 2018. PMID: 30026930 Free PMC article. Review.
Population Genomics of Paramecium Species.
Johri P, Krenek S, Marinov GK, Doak TG, Berendonk TU, Lynch M. Johri P, et al. Mol Biol Evol. 2017 May 1;34(5):1194-1216. doi: 10.1093/molbev/msx074. Mol Biol Evol. 2017. PMID: 28204679
98 results