Bennett GN - Search Results

1

A review of parameters and heuristics for guiding metabolic pathfinding.

Kim SM, Peña MI, Moll M, Bennett GN, Kavraki LE. Kim SM, et al. Among authors: bennett gn. J Cheminform. 2017 Sep 15;9(1):51. doi: 10.1186/s13321-017-0239-6. J Cheminform. 2017. PMID: 29086092 Free PMC article. Review.

2

Improving the organization and interactivity of metabolic pathfinding with precomputed pathways.

Kim SM, Peña MI, Moll M, Bennett GN, Kavraki LE. Kim SM, et al. Among authors: bennett gn. BMC Bioinformatics. 2020 Jan 10;21(1):13. doi: 10.1186/s12859-019-3328-x. BMC Bioinformatics. 2020. PMID: 31924164 Free PMC article.

3

Finding metabolic pathways using atom tracking.

Heath AP, Bennett GN, Kavraki LE. Heath AP, et al. Among authors: bennett gn. Bioinformatics. 2010 Jun 15;26(12):1548-55. doi: 10.1093/bioinformatics/btq223. Epub 2010 Apr 25. Bioinformatics. 2010. PMID: 20421197 Free PMC article.

4

An algorithm for efficient identification of branched metabolic pathways.

Heath AP, Bennett GN, Kavraki LE. Heath AP, et al. Among authors: bennett gn. J Comput Biol. 2011 Nov;18(11):1575-97. doi: 10.1089/cmb.2011.0165. Epub 2011 Oct 14. J Comput Biol. 2011. PMID: 21999288

5

Machine Learning Guided Atom Mapping of Metabolic Reactions.

Litsa EE, Peña MI, Moll M, Giannakopoulos G, Bennett GN, Kavraki LE. Litsa EE, et al. Among authors: bennett gn. J Chem Inf Model. 2019 Mar 25;59(3):1121-1135. doi: 10.1021/acs.jcim.8b00434. Epub 2018 Dec 14. J Chem Inf Model. 2019. PMID: 30500191

6

Metabolic engineering of Escherichia coli for quinolinic acid production by assembling L-aspartate oxidase and quinolinate synthase as an enzyme complex.

Zhu F, Peña M, Bennett GN. Zhu F, et al. Among authors: bennett gn. Metab Eng. 2021 Sep;67:164-172. doi: 10.1016/j.ymben.2021.06.007. Epub 2021 Jun 27. Metab Eng. 2021. PMID: 34192552 Free PMC article.

7

Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability.

Qi F, Thakker C, Zhu F, Pena M, San KY, Bennett GN. Qi F, et al. Among authors: bennett gn. J Ind Microbiol Biotechnol. 2018 Nov;45(11):993-1002. doi: 10.1007/s10295-018-2068-7. Epub 2018 Aug 23. J Ind Microbiol Biotechnol. 2018. PMID: 30141107

8

Metabolic engineering of carbon and redox flow in the production of small organic acids.

Thakker C, Martínez I, Li W, San KY, Bennett GN. Thakker C, et al. Among authors: bennett gn. J Ind Microbiol Biotechnol. 2015 Mar;42(3):403-22. doi: 10.1007/s10295-014-1560-y. Epub 2014 Dec 13. J Ind Microbiol Biotechnol. 2015. PMID: 25502283 Free article. Review.

9

Genetically constrained metabolic flux analysis.

Cox SJ, Shalel Levanon S, Bennett GN, San KY. Cox SJ, et al. Among authors: bennett gn. Metab Eng. 2005 Sep-Nov;7(5-6):445-56. doi: 10.1016/j.ymben.2005.07.004. Epub 2005 Sep 6. Metab Eng. 2005. PMID: 16143552

10

Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways.

Martínez I, Zhu J, Lin H, Bennett GN, San KY. Martínez I, et al. Among authors: bennett gn. Metab Eng. 2008 Nov;10(6):352-9. doi: 10.1016/j.ymben.2008.09.001. Epub 2008 Sep 23. Metab Eng. 2008. PMID: 18852061

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