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Year Number of Results
2019 2
2021 7
2022 4
2023 2
2024 0

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15 results

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Predicting genotype-specific gene regulatory networks.
Weighill D, Ben Guebila M, Glass K, Quackenbush J, Platig J. Weighill D, et al. Among authors: ben guebila m. Genome Res. 2022 Mar;32(3):524-533. doi: 10.1101/gr.275107.120. Epub 2022 Feb 22. Genome Res. 2022. PMID: 35193937 Free PMC article.
Gene Targeting in Disease Networks.
Weighill D, Ben Guebila M, Glass K, Platig J, Yeh JJ, Quackenbush J. Weighill D, et al. Among authors: ben guebila m. Front Genet. 2021 Apr 23;12:649942. doi: 10.3389/fgene.2021.649942. eCollection 2021. Front Genet. 2021. PMID: 33968133 Free PMC article.
Identification and Development of Therapeutics for COVID-19.
Rando HM, Wellhausen N, Ghosh S, Lee AJ, Dattoli AA, Hu F, Byrd JB, Rafizadeh DN, Lordan R, Qi Y, Sun Y, Brueffer C, Field JM, Ben Guebila M, Jadavji NM, Skelly AN, Ramsundar B, Wang J, Goel RR, Park Y; COVID-19 Review Consortium Vikas Bansal, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brueffer, James Brian Byrd, Stephen Capone, Shikta Das, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen; Boca SM, Gitter A, Greene CS. Rando HM, et al. Among authors: ben guebila m. mSystems. 2021 Dec 21;6(6):e0023321. doi: 10.1128/mSystems.00233-21. Epub 2021 Nov 2. mSystems. 2021. PMID: 34726496 Free PMC article.
Crowdsourced mapping of unexplored target space of kinase inhibitors.
Cichońska A, Ravikumar B, Allaway RJ, Wan F, Park S, Isayev O, Li S, Mason M, Lamb A, Tanoli Z, Jeon M, Kim S, Popova M, Capuzzi S, Zeng J, Dang K, Koytiger G, Kang J, Wells CI, Willson TM; IDG-DREAM Drug-Kinase Binding Prediction Challenge Consortium; Oprea TI, Schlessinger A, Drewry DH, Stolovitzky G, Wennerberg K, Guinney J, Aittokallio T. Cichońska A, et al. Nat Commun. 2021 Jun 3;12(1):3307. doi: 10.1038/s41467-021-23165-1. Nat Commun. 2021. PMID: 34083538 Free PMC article.
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. Ben Guebila M, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D610-D621. doi: 10.1093/nar/gkab778. Nucleic Acids Res. 2022. PMID: 34508353 Free PMC article.
Bayesian Optimized sample-specific Networks Obtained By Omics data (BONOBO).
Saha E, Fanfani V, Mandros P, Ben-Guebila M, Fischer J, Hoff-Shutta K, Glass K, DeMeo DL, Lopes-Ramos C, Quackenbush J. Saha E, et al. Among authors: ben guebila m. bioRxiv [Preprint]. 2023 Nov 17:2023.11.16.567119. doi: 10.1101/2023.11.16.567119. bioRxiv. 2023. PMID: 38014256 Free PMC article. Preprint.
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J. Ben Guebila M, et al. Genome Biol. 2023 Mar 9;24(1):45. doi: 10.1186/s13059-023-02877-1. Genome Biol. 2023. PMID: 36894939 Free PMC article.
15 results