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The species translation challenge-a systems biology perspective on human and rat bronchial epithelial cells.
Poussin C, Mathis C, Alexopoulos LG, Messinis DE, Dulize RH, Belcastro V, Melas IN, Sakellaropoulos T, Rhrissorrakrai K, Bilal E, Meyer P, Talikka M, Boué S, Norel R, Rice JJ, Stolovitzky G, Ivanov NV, Peitsch MC, Hoeng J. Poussin C, et al. Among authors: belcastro v. Sci Data. 2014 Jun 10;1:140009. doi: 10.1038/sdata.2014.9. eCollection 2014. Sci Data. 2014. PMID: 25977767 Free PMC article.
Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge.
Poussin C, Khachatryan L, Sierro N, Narsapuram VK, Meyer F, Kaikala V, Chawla V, Muppirala U, Kumar S, Belcastro V, Battey JND, Scotti E, Boué S, McHardy AC, Peitsch MC, Ivanov NV, Hoeng J. Poussin C, et al. Among authors: belcastro v. BMC Genomics. 2022 Aug 30;23(1):624. doi: 10.1186/s12864-022-08803-2. BMC Genomics. 2022. PMID: 36042406 Free PMC article.
Human bronchial epithelial cells exposed in vitro to cigarette smoke at the air-liquid interface resemble bronchial epithelium from human smokers.
Mathis C, Poussin C, Weisensee D, Gebel S, Hengstermann A, Sewer A, Belcastro V, Xiang Y, Ansari S, Wagner S, Hoeng J, Peitsch MC. Mathis C, et al. Among authors: belcastro v. Am J Physiol Lung Cell Mol Physiol. 2013 Apr 1;304(7):L489-503. doi: 10.1152/ajplung.00181.2012. Epub 2013 Jan 25. Am J Physiol Lung Cell Mol Physiol. 2013. PMID: 23355383 Free PMC article.
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.
Rhrissorrakrai K, Belcastro V, Bilal E, Norel R, Poussin C, Mathis C, Dulize RH, Ivanov NV, Alexopoulos L, Rice JJ, Peitsch MC, Stolovitzky G, Meyer P, Hoeng J. Rhrissorrakrai K, et al. Among authors: belcastro v. Bioinformatics. 2015 Feb 15;31(4):471-83. doi: 10.1093/bioinformatics/btu611. Epub 2014 Sep 17. Bioinformatics. 2015. PMID: 25236459 Free PMC article.
A crowd-sourcing approach for the construction of species-specific cell signaling networks.
Bilal E, Sakellaropoulos T, Melas IN, Messinis DE, Belcastro V, Rhrissorrakrai K, Meyer P, Norel R, Iskandar A, Blaese E, Rice JJ, Peitsch MC, Hoeng J, Stolovitzky G, Alexopoulos LG, Poussin C; Challenge Participants. Bilal E, et al. Among authors: belcastro v. Bioinformatics. 2015 Feb 15;31(4):484-91. doi: 10.1093/bioinformatics/btu659. Epub 2014 Oct 7. Bioinformatics. 2015. PMID: 25294919 Free PMC article.
A systems biology approach reveals the dose- and time-dependent effect of primary human airway epithelium tissue culture after exposure to cigarette smoke in vitro.
Mathis C, Gebel S, Poussin C, Belcastro V, Sewer A, Weisensee D, Hengstermann A, Ansari S, Wagner S, Peitsch MC, Hoeng J. Mathis C, et al. Among authors: belcastro v. Bioinform Biol Insights. 2015 Mar 9;9:19-35. doi: 10.4137/BBI.S19908. eCollection 2015. Bioinform Biol Insights. 2015. PMID: 25788831 Free PMC article.
The sbv IMPROVER Systems Toxicology Computational Challenge: Identification of Human and Species-Independent Blood Response Markers as Predictors of Smoking Exposure and Cessation Status.
Belcastro V, Poussin C, Xiang Y, Giordano M, Tripathi KP, Boda A, Boué S, Guarracino M, Martin F, Peitsch MC, Hoeng J, Romero R, Tarca AL, Duan Z, Yang H, Gong X, Wang P, Zhang C, Yang W, Sarac OS, Bilgen I, Balci AT, Kumar R, Dhanda SK. Belcastro V, et al. Comput Toxicol. 2018 Feb;5:38-51. doi: 10.1016/j.comtox.2017.07.004. Epub 2017 Jul 14. Comput Toxicol. 2018. PMID: 30221212 Free PMC article.
199 results