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Minimum Information About a Simulation Experiment (MIASE).
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N. Waltemath D, et al. Among authors: beard da. PLoS Comput Biol. 2011 Apr;7(4):e1001122. doi: 10.1371/journal.pcbi.1001122. Epub 2011 Apr 28. PLoS Comput Biol. 2011. PMID: 21552546 Free PMC article. No abstract available.
CellML metadata standards, associated tools and repositories.
Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielsen PM, Nomura T, Subramanium S, Wimalaratne SM, Yu T. Beard DA, et al. Philos Trans A Math Phys Eng Sci. 2009 May 28;367(1895):1845-67. doi: 10.1098/rsta.2008.0310. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19380315 Free PMC article.
Bridging the genotype-phenotype gap: what does it take?
Gjuvsland AB, Vik JO, Beard DA, Hunter PJ, Omholt SW. Gjuvsland AB, et al. Among authors: beard da. J Physiol. 2013 Apr 15;591(8):2055-66. doi: 10.1113/jphysiol.2012.248864. Epub 2013 Feb 11. J Physiol. 2013. PMID: 23401613 Free PMC article. Review.
Theoretical models for coronary vascular biomechanics: progress & challenges.
Waters SL, Alastruey J, Beard DA, Bovendeerd PH, Davies PF, Jayaraman G, Jensen OE, Lee J, Parker KH, Popel AS, Secomb TW, Siebes M, Sherwin SJ, Shipley RJ, Smith NP, van de Vosse FN. Waters SL, et al. Among authors: beard da. Prog Biophys Mol Biol. 2011 Jan;104(1-3):49-76. doi: 10.1016/j.pbiomolbio.2010.10.001. Epub 2010 Oct 30. Prog Biophys Mol Biol. 2011. PMID: 21040741 Free PMC article. Review.
Computational modeling of physiological systems.
Beard DA, Bassingthwaighte JB, Greene AS. Beard DA, et al. Physiol Genomics. 2005 Sep 21;23(1):1-3; discussion 4. doi: 10.1152/physiolgenomics.00117.2005. Physiol Genomics. 2005. PMID: 16179418 No abstract available.
163 results