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Mass-spectrometry-based draft of the Arabidopsis proteome.
Mergner J, Frejno M, List M, Papacek M, Chen X, Chaudhary A, Samaras P, Richter S, Shikata H, Messerer M, Lang D, Altmann S, Cyprys P, Zolg DP, Mathieson T, Bantscheff M, Hazarika RR, Schmidt T, Dawid C, Dunkel A, Hofmann T, Sprunck S, Falter-Braun P, Johannes F, Mayer KFX, Jürgens G, Wilhelm M, Baumbach J, Grill E, Schneitz K, Schwechheimer C, Kuster B. Mergner J, et al. Among authors: baumbach j. Nature. 2020 Mar;579(7799):409-414. doi: 10.1038/s41586-020-2094-2. Epub 2020 Mar 11. Nature. 2020. PMID: 32188942
Interactive microbial distribution analysis using BioAtlas.
Lund JB, List M, Baumbach J. Lund JB, et al. Among authors: baumbach j. Nucleic Acids Res. 2017 Jul 3;45(W1):W509-W513. doi: 10.1093/nar/gkx304. Nucleic Acids Res. 2017. PMID: 28460071 Free PMC article.
On the performance of de novo pathway enrichment.
Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: baumbach j. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.
De novo pathway-based biomarker identification.
Alcaraz N, List M, Batra R, Vandin F, Ditzel HJ, Baumbach J. Alcaraz N, et al. Among authors: baumbach j. Nucleic Acids Res. 2017 Sep 19;45(16):e151. doi: 10.1093/nar/gkx642. Nucleic Acids Res. 2017. PMID: 28934488 Free PMC article.
EpiGEN: an epistasis simulation pipeline.
Blumenthal DB, Viola L, List M, Baumbach J, Tieri P, Kacprowski T. Blumenthal DB, et al. Among authors: baumbach j. Bioinformatics. 2020 Dec 8;36(19):4957-4959. doi: 10.1093/bioinformatics/btaa245. Bioinformatics. 2020. PMID: 32289146
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.
Sadegh S, Matschinske J, Blumenthal DB, Galindez G, Kacprowski T, List M, Nasirigerdeh R, Oubounyt M, Pichlmair A, Rose TD, Salgado-Albarrán M, Späth J, Stukalov A, Wenke NK, Yuan K, Pauling JK, Baumbach J. Sadegh S, et al. Among authors: baumbach j. Nat Commun. 2020 Jul 14;11(1):3518. doi: 10.1038/s41467-020-17189-2. Nat Commun. 2020. PMID: 32665542 Free PMC article.
378 results