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The ecoresponsive genome of Daphnia pulex.
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. Colbourne JK, et al. Among authors: basu mk. Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761. Science. 2011. PMID: 21292972 Free PMC article.
Primordial spliceosomal introns were probably U2-type.
Basu MK, Rogozin IB, Koonin EV. Basu MK, et al. Trends Genet. 2008 Nov;24(11):525-8. doi: 10.1016/j.tig.2008.09.002. Epub 2008 Sep 27. Trends Genet. 2008. PMID: 18824272 Free PMC article.
Evolution of protein domain promiscuity in eukaryotes.
Basu MK, Carmel L, Rogozin IB, Koonin EV. Basu MK, et al. Genome Res. 2008 Mar;18(3):449-61. doi: 10.1101/gr.6943508. Epub 2008 Jan 29. Genome Res. 2008. PMID: 18230802 Free PMC article.
Grammar of protein domain architectures.
Yu L, Tanwar DK, Penha EDS, Wolf YI, Koonin EV, Basu MK. Yu L, et al. Among authors: basu mk. Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3636-3645. doi: 10.1073/pnas.1814684116. Epub 2019 Feb 7. Proc Natl Acad Sci U S A. 2019. PMID: 30733291 Free PMC article.
128 results