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Integrative network modeling reveals mechanisms underlying T cell exhaustion.
Bolouri H, Young M, Beilke J, Johnson R, Fox B, Huang L, Santini CC, Hill CM, Vries AVV, Shannon PT, Dervan A, Sivakumar P, Trotter M, Bassett D, Ratushny A. Bolouri H, et al. Among authors: bassett d. Sci Rep. 2020 Feb 5;10(1):1915. doi: 10.1038/s41598-020-58600-8. Sci Rep. 2020. PMID: 32024856 Free PMC article.
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease.
Mason MJ, Schinke C, Eng CLP, Towfic F, Gruber F, Dervan A, White BS, Pratapa A, Guan Y, Chen H, Cui Y, Li B, Yu T, Chaibub Neto E, Mavrommatis K, Ortiz M, Lyzogubov V, Bisht K, Dai HY, Schmitz F, Flynt E, Dan Rozelle, Danziger SA, Ratushny A; Multiple Myeloma DREAM Consortium; Dalton WS, Goldschmidt H, Avet-Loiseau H, Samur M, Hayete B, Sonneveld P, Shain KH, Munshi N, Auclair D, Hose D, Morgan G, Trotter M, Bassett D, Goke J, Walker BA, Thakurta A, Guinney J. Mason MJ, et al. Among authors: bassett d. Leukemia. 2020 Jul;34(7):1866-1874. doi: 10.1038/s41375-020-0742-z. Epub 2020 Feb 14. Leukemia. 2020. PMID: 32060406 Free PMC article.
Rosetta error model for gene expression analysis.
Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE. Weng L, et al. Bioinformatics. 2006 May 1;22(9):1111-21. doi: 10.1093/bioinformatics/btl045. Epub 2006 Mar 7. Bioinformatics. 2006. PMID: 16522673
Human learning of hierarchical graphs.
Xia X, Klishin AA, Stiso J, Lynn CW, Kahn AE, Caciagli L, Bassett DS. Xia X, et al. Among authors: bassett ds. Phys Rev E. 2024 Apr;109(4-1):044305. doi: 10.1103/PhysRevE.109.044305. Phys Rev E. 2024. PMID: 38755869
908 results