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FIESTA: Autoencoders for accurate fiber segmentation in tractography.
Dumais F, Legarreta JH, Lemaire C, Poulin P, Rheault F, Petit L, Barakovic M, Magon S, Descoteaux M, Jodoin PM; Alzheimer’s Disease Neuroimaging Initiative. Dumais F, et al. Among authors: barakovic m. Neuroimage. 2023 Oct 1;279:120288. doi: 10.1016/j.neuroimage.2023.120288. Epub 2023 Jul 24. Neuroimage. 2023. PMID: 37495198 Free article.
The challenge of mapping the human connectome based on diffusion tractography.
Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, Requejo FS, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M. Maier-Hein KH, et al. Among authors: barakovic m. Nat Commun. 2017 Nov 7;8(1):1349. doi: 10.1038/s41467-017-01285-x. Nat Commun. 2017. PMID: 29116093 Free PMC article.
Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI.
Canales-Rodríguez EJ, Legarreta JH, Pizzolato M, Rensonnet G, Girard G, Patino JR, Barakovic M, Romascano D, Alemán-Gómez Y, Radua J, Pomarol-Clotet E, Salvador R, Thiran JP, Daducci A. Canales-Rodríguez EJ, et al. Among authors: barakovic m. Neuroimage. 2019 Jan 1;184:140-160. doi: 10.1016/j.neuroimage.2018.08.071. Epub 2018 Sep 5. Neuroimage. 2019. PMID: 30193974
Limits to anatomical accuracy of diffusion tractography using modern approaches.
Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez EJ, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA. Schilling KG, et al. Among authors: barakovic m. Neuroimage. 2019 Jan 15;185:1-11. doi: 10.1016/j.neuroimage.2018.10.029. Epub 2018 Oct 11. Neuroimage. 2019. PMID: 30317017 Free PMC article.
Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.
Nath V, Schilling KG, Parvathaneni P, Huo Y, Blaber JA, Hainline AE, Barakovic M, Romascano D, Rafael-Patino J, Frigo M, Girard G, Thiran JP, Daducci A, Rowe M, Rodrigues P, Prčkovska V, Aydogan DB, Sun W, Shi Y, Parker WA, Ould Ismail AA, Verma R, Cabeen RP, Toga AW, Newton AT, Wasserthal J, Neher P, Maier-Hein K, Savini G, Palesi F, Kaden E, Wu Y, He J, Feng Y, Paquette M, Rheault F, Sidhu J, Lebel C, Leemans A, Descoteaux M, Dyrby TB, Kang H, Landman BA. Nath V, et al. Among authors: barakovic m. J Magn Reson Imaging. 2020 Jan;51(1):234-249. doi: 10.1002/jmri.26794. Epub 2019 Jun 9. J Magn Reson Imaging. 2020. PMID: 31179595 Free PMC article.
Author Correction: The challenge of mapping the human connectome based on diffusion tractography.
Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, De Santiago Requejo F, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M. Maier-Hein KH, et al. Among authors: barakovic m. Nat Commun. 2019 Nov 4;10(1):5059. doi: 10.1038/s41467-019-12867-2. Nat Commun. 2019. PMID: 31685826 Free PMC article.
Tractostorm: The what, why, and how of tractography dissection reproducibility.
Rheault F, De Benedictis A, Daducci A, Maffei C, Tax CMW, Romascano D, Caverzasi E, Morency FC, Corrivetti F, Pestilli F, Girard G, Theaud G, Zemmoura I, Hau J, Glavin K, Jordan KM, Pomiecko K, Chamberland M, Barakovic M, Goyette N, Poulin P, Chenot Q, Panesar SS, Sarubbo S, Petit L, Descoteaux M. Rheault F, et al. Among authors: barakovic m. Hum Brain Mapp. 2020 May;41(7):1859-1874. doi: 10.1002/hbm.24917. Epub 2020 Jan 10. Hum Brain Mapp. 2020. PMID: 31925871 Free PMC article. Review.
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián Á, Calamante F, Attyé A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JY, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O'Donnell LJ, Xia Y, Aydogan DB, Shi Y, Fernandes FG, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Meraz MR, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAMG, D'Angelo E, Palesi … See abstract for full author list ➔ Schilling KG, et al. Among authors: barakovic m. Neuroimage. 2021 Nov;243:118502. doi: 10.1016/j.neuroimage.2021.118502. Epub 2021 Aug 22. Neuroimage. 2021. PMID: 34433094 Free PMC article.
50 results