Banga JR - Search Results

1

PEtab-Interoperable specification of parameter estimation problems in systems biology.

Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D. Schmiester L, et al. Among authors: banga jr. PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371/journal.pcbi.1008646. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497393 Free PMC article.

2

Hybrid optimization method with general switching strategy for parameter estimation.

Balsa-Canto E, Peifer M, Banga JR, Timmer J, Fleck C. Balsa-Canto E, et al. Among authors: banga jr. BMC Syst Biol. 2008 Mar 24;2:26. doi: 10.1186/1752-0509-2-26. BMC Syst Biol. 2008. PMID: 18366722 Free PMC article.

3

SensSB: a software toolbox for the development and sensitivity analysis of systems biology models.

Rodriguez-Fernandez M, Banga JR. Rodriguez-Fernandez M, et al. Among authors: banga jr. Bioinformatics. 2010 Jul 1;26(13):1675-6. doi: 10.1093/bioinformatics/btq242. Epub 2010 May 5. Bioinformatics. 2010. PMID: 20444837

4

AMIGO, a toolbox for advanced model identification in systems biology using global optimization.

Balsa-Canto E, Banga JR. Balsa-Canto E, et al. Among authors: banga jr. Bioinformatics. 2011 Aug 15;27(16):2311-3. doi: 10.1093/bioinformatics/btr370. Epub 2011 Jun 17. Bioinformatics. 2011. PMID: 21685047 Free PMC article.

5

Use of a generalized fisher equation for global optimization in chemical kinetics.

Villaverde AF, Ross J, Morán F, Balsa-Canto E, Banga JR. Villaverde AF, et al. Among authors: banga jr. J Phys Chem A. 2011 Aug 4;115(30):8426-36. doi: 10.1021/jp203158r. Epub 2011 Jul 14. J Phys Chem A. 2011. PMID: 21711023

6

Structural identifiability of systems biology models: a critical comparison of methods.

Chis OT, Banga JR, Balsa-Canto E. Chis OT, et al. Among authors: banga jr. PLoS One. 2011;6(11):e27755. doi: 10.1371/journal.pone.0027755. Epub 2011 Nov 22. PLoS One. 2011. PMID: 22132135 Free PMC article.

7

Global optimization in systems biology: stochastic methods and their applications.

Balsa-Canto E, Banga JR, Egea JA, Fernandez-Villaverde A, de Hijas-Liste GM. Balsa-Canto E, et al. Among authors: banga jr. Adv Exp Med Biol. 2012;736:409-24. doi: 10.1007/978-1-4419-7210-1_24. Adv Exp Med Biol. 2012. PMID: 22161343

8

A cooperative strategy for parameter estimation in large scale systems biology models.

Villaverde AF, Egea JA, Banga JR. Villaverde AF, et al. Among authors: banga jr. BMC Syst Biol. 2012 Jun 22;6:75. doi: 10.1186/1752-0509-6-75. BMC Syst Biol. 2012. PMID: 22727112 Free PMC article.

9

Multi-criteria optimization of regulation in metabolic networks.

Higuera C, Villaverde AF, Banga JR, Ross J, Morán F. Higuera C, et al. Among authors: banga jr. PLoS One. 2012;7(7):e41122. doi: 10.1371/journal.pone.0041122. Epub 2012 Jul 26. PLoS One. 2012. PMID: 22848435 Free PMC article.

10

Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems.

Rodriguez-Fernandez M, Rehberg M, Kremling A, Banga JR. Rodriguez-Fernandez M, et al. Among authors: banga jr. BMC Syst Biol. 2013 Aug 12;7:76. doi: 10.1186/1752-0509-7-76. BMC Syst Biol. 2013. PMID: 23938131 Free PMC article.

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