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CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes.
Adler BA, Trinidad MI, Bellieny-Rabelo D, Zhang E, Karp HM, Skopintsev P, Thornton BW, Weissman RF, Yoon PH, Chen L, Hessler T, Eggers AR, Colognori D, Boger R, Doherty EE, Tsuchida CA, Tran RV, Hofman L, Shi H, Wasko KM, Zhou Z, Xia C, Al-Shimary MJ, Patel JR, Thomas VCJX, Pattali R, Kan MJ, Vardapetyan A, Yang A, Lahiri A, Maxwell MF, Murdock AG, Ramit GC, Henderson HR, Calvert RW, Bamert RS, Knott GJ, Lapinaite A, Pausch P, Cofsky JC, Sontheimer EJ, Wiedenheft B, Fineran PC, Brouns SJJ, Sashital DG, Thomas BC, Brown CT, Goltsman DSA, Barrangou R, Siksnys V, Banfield JF, Savage DF, Doudna JA. Adler BA, et al. Among authors: bamert rs. Nucleic Acids Res. 2024 Jan 5;52(D1):D590-D596. doi: 10.1093/nar/gkad890. Nucleic Acids Res. 2024. PMID: 37889041 Free PMC article.
Bacteriophages evolve enhanced persistence to a mucosal surface.
Chin WH, Kett C, Cooper O, Müseler D, Zhang Y, Bamert RS, Patwa R, Woods LC, Devendran C, Korneev D, Tiralongo J, Lithgow T, McDonald MJ, Neild A, Barr JJ. Chin WH, et al. Among authors: bamert rs. Proc Natl Acad Sci U S A. 2022 Jul 5;119(27):e2116197119. doi: 10.1073/pnas.2116197119. Epub 2022 Jun 29. Proc Natl Acad Sci U S A. 2022. PMID: 35767643 Free PMC article.
Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features.
Thung TY, White ME, Dai W, Wilksch JJ, Bamert RS, Rocker A, Stubenrauch CJ, Williams D, Huang C, Schittelhelm R, Barr JJ, Jameson E, McGowan S, Zhang Y, Wang J, Dunstan RA, Lithgow T. Thung TY, et al. Among authors: bamert rs. mSystems. 2021 Jun 29;6(3):e0024221. doi: 10.1128/mSystems.00242-21. Epub 2021 May 27. mSystems. 2021. PMID: 34042467 Free PMC article.
23 results