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ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.
Borovec J, Kybic J, Arganda-Carreras I, Sorokin DV, Bueno G, Khvostikov AV, Bakas S, Chang EI, Heldmann S, Kartasalo K, Latonen L, Lotz J, Noga M, Pati S, Punithakumar K, Ruusuvuori P, Skalski A, Tahmasebi N, Valkonen M, Venet L, Wang Y, Weiss N, Wodzinski M, Xiang Y, Xu Y, Yan Y, Yushkevich P, Zhao S, Munoz-Barrutia A. Borovec J, et al. Among authors: bakas s. IEEE Trans Med Imaging. 2020 Oct;39(10):3042-3052. doi: 10.1109/TMI.2020.2986331. Epub 2020 Apr 7. IEEE Trans Med Imaging. 2020. PMID: 32275587 Free PMC article.
Federated learning enables big data for rare cancer boundary detection.
Pati S, Baid U, Edwards B, Sheller M, Wang SH, Reina GA, Foley P, Gruzdev A, Karkada D, Davatzikos C, Sako C, Ghodasara S, Bilello M, Mohan S, Vollmuth P, Brugnara G, Preetha CJ, Sahm F, Maier-Hein K, Zenk M, Bendszus M, Wick W, Calabrese E, Rudie J, Villanueva-Meyer J, Cha S, Ingalhalikar M, Jadhav M, Pandey U, Saini J, Garrett J, Larson M, Jeraj R, Currie S, Frood R, Fatania K, Huang RY, Chang K, Balaña C, Capellades J, Puig J, Trenkler J, Pichler J, Necker G, Haunschmidt A, Meckel S, Shukla G, Liem S, Alexander GS, Lombardo J, Palmer JD, Flanders AE, Dicker AP, Sair HI, Jones CK, Venkataraman A, Jiang M, So TY, Chen C, Heng PA, Dou Q, Kozubek M, Lux F, Michálek J, Matula P, Keřkovský M, Kopřivová T, Dostál M, Vybíhal V, Vogelbaum MA, Mitchell JR, Farinhas J, Maldjian JA, Yogananda CGB, Pinho MC, Reddy D, Holcomb J, Wagner BC, Ellingson BM, Cloughesy TF, Raymond C, Oughourlian T, Hagiwara A, Wang C, To MS, Bhardwaj S, Chong C, Agzarian M, Falcão AX, Martins SB, Teixeira BCA, Sprenger F, Menotti D, Lucio DR, LaMontagne P, Marcus D, Wiestler B, Kofler F, Ezhov I, Metz M, Jain R, Lee M, Lui YW, McKinley R, Slotboom J, Radojewski P, Meier R, Wiest R, Murcia D, Fu E, Haas R, Thompson… See abstract for full author list ➔ Pati S, et al. Among authors: bakas s. Nat Commun. 2022 Dec 5;13(1):7346. doi: 10.1038/s41467-022-33407-5. Nat Commun. 2022. PMID: 36470898 Free PMC article.
Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.
Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D. Davatzikos C, et al. Among authors: bakas s. J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11. J Med Imaging (Bellingham). 2018. PMID: 29340286 Free PMC article.
Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset.
Pati S, Verma R, Akbari H, Bilello M, Hill VB, Sako C, Correa R, Beig N, Venet L, Thakur S, Serai P, Ha SM, Blake GD, Shinohara RT, Tiwari P, Bakas S. Pati S, et al. Among authors: bakas s. Med Phys. 2020 Dec;47(12):6039-6052. doi: 10.1002/mp.14556. Epub 2020 Dec 4. Med Phys. 2020. PMID: 33118182 Free PMC article.
OpenFL: the open federated learning library.
Foley P, Sheller MJ, Edwards B, Pati S, Riviera W, Sharma M, Narayana Moorthy P, Wang SH, Martin J, Mirhaji P, Shah P, Bakas S. Foley P, et al. Among authors: bakas s. Phys Med Biol. 2022 Oct 19;67(21):214001. doi: 10.1088/1361-6560/ac97d9. Phys Med Biol. 2022. PMID: 36198326 Free PMC article.
103 results