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Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Gruber DR, Toner JJ, Miears HL, Shernyukov AV, Kiryutin AS, Lomzov AA, Endutkin AV, Grin IR, Petrova DV, Kupryushkin MS, Yurkovskaya AV, Johnson EC, Okon M, Bagryanskaya EG, Zharkov DO, Smirnov SL. Gruber DR, et al. Among authors: bagryanskaya eg. Nucleic Acids Res. 2018 Nov 16;46(20):10827-10839. doi: 10.1093/nar/gky893. Nucleic Acids Res. 2018. PMID: 30289469 Free PMC article.
Physiological-temperature distance measurement in nucleic acid using triarylmethyl-based spin labels and pulsed dipolar EPR spectroscopy.
Shevelev GY, Krumkacheva OA, Lomzov AA, Kuzhelev AA, Rogozhnikova OY, Trukhin DV, Troitskaya TI, Tormyshev VM, Fedin MV, Pyshnyi DV, Bagryanskaya EG. Shevelev GY, et al. Among authors: bagryanskaya eg. J Am Chem Soc. 2014 Jul 16;136(28):9874-7. doi: 10.1021/ja505122n. Epub 2014 Jul 1. J Am Chem Soc. 2014. PMID: 24963806
Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels.
Lomzov AA, Sviridov EA, Shernuykov AV, Shevelev GY, Pyshnyi DV, Bagryanskaya EG. Lomzov AA, et al. Among authors: bagryanskaya eg. J Phys Chem B. 2016 Jun 16;120(23):5125-33. doi: 10.1021/acs.jpcb.6b03193. Epub 2016 Jun 3. J Phys Chem B. 2016. PMID: 27195671
Complementary-addressed site-directed spin labeling of long natural RNAs.
Babaylova ES, Malygin AA, Lomzov AA, Pyshnyi DV, Yulikov M, Jeschke G, Krumkacheva OA, Fedin MV, Karpova GG, Bagryanskaya EG. Babaylova ES, et al. Among authors: bagryanskaya eg. Nucleic Acids Res. 2016 Sep 19;44(16):7935-43. doi: 10.1093/nar/gkw516. Epub 2016 Jun 6. Nucleic Acids Res. 2016. PMID: 27269581 Free PMC article.
DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling.
Krumkacheva OA, Shevelev GY, Lomzov AA, Dyrkheeva NS, Kuzhelev AA, Koval VV, Tormyshev VM, Polienko YF, Fedin MV, Pyshnyi DV, Lavrik OI, Bagryanskaya EG. Krumkacheva OA, et al. Among authors: bagryanskaya eg. Nucleic Acids Res. 2019 Sep 5;47(15):7767-7780. doi: 10.1093/nar/gkz620. Nucleic Acids Res. 2019. PMID: 31329919 Free PMC article.
Exploring the interactions of short RNAs with the human 40S ribosomal subunit near the mRNA entry site by EPR spectroscopy.
Malygin AA, Krumkacheva OA, Graifer DM, Timofeev IO, Ochkasova AS, Meschaninova MI, Venyaminova AG, Fedin MV, Bowman M, Karpova GG, Bagryanskaya EG. Malygin AA, et al. Among authors: bagryanskaya eg. Nucleic Acids Res. 2019 Dec 16;47(22):11850-11860. doi: 10.1093/nar/gkz1039. Nucleic Acids Res. 2019. PMID: 31724718 Free PMC article.
111 results