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Page 1
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity.
Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, da Costa NM, Seung HS. Turner NL, et al. Among authors: bae ja. Cell. 2022 Mar 17;185(6):1082-1100.e24. doi: 10.1016/j.cell.2022.01.023. Epub 2022 Feb 24. Cell. 2022. PMID: 35216674 Free PMC article.
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology.
Bae JA, Mu S, Kim JS, Turner NL, Tartavull I, Kemnitz N, Jordan CS, Norton AD, Silversmith WM, Prentki R, Sorek M, David C, Jones DL, Bland D, Sterling ALR, Park J, Briggman KL, Seung HS; Eyewirers. Bae JA, et al. Cell. 2018 May 17;173(5):1293-1306.e19. doi: 10.1016/j.cell.2018.04.040. Cell. 2018. PMID: 29775596 Free PMC article.
FlyWire: online community for whole-brain connectomics.
Dorkenwald S, McKellar CE, Macrina T, Kemnitz N, Lee K, Lu R, Wu J, Popovych S, Mitchell E, Nehoran B, Jia Z, Bae JA, Mu S, Ih D, Castro M, Ogedengbe O, Halageri A, Kuehner K, Sterling AR, Ashwood Z, Zung J, Brittain D, Collman F, Schneider-Mizell C, Jordan C, Silversmith W, Baker C, Deutsch D, Encarnacion-Rivera L, Kumar S, Burke A, Bland D, Gager J, Hebditch J, Koolman S, Moore M, Morejohn S, Silverman B, Willie K, Willie R, Yu SC, Murthy M, Seung HS. Dorkenwald S, et al. Among authors: bae ja. Nat Methods. 2022 Jan;19(1):119-128. doi: 10.1038/s41592-021-01330-0. Epub 2021 Dec 23. Nat Methods. 2022. PMID: 34949809 Free PMC article.
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex.
Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, Bae JA, Castro MA, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J; MICrONS Consortium; Reimer J, Tolias AS, Seung HS, Reid RC, Collman F, Maçarico da Costa N. Schneider-Mizell CM, et al. Among authors: bae ja. bioRxiv [Preprint]. 2024 Jan 6:2023.01.23.525290. doi: 10.1101/2023.01.23.525290. bioRxiv. 2024. PMID: 36747710 Free PMC article. Preprint.
NEURD: automated proofreading and feature extraction for connectomics.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. Celii B, et al. Among authors: bae ja. bioRxiv [Preprint]. 2024 Apr 27:2023.03.14.532674. doi: 10.1101/2023.03.14.532674. bioRxiv. 2024. PMID: 36993282 Free PMC article. Preprint.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Muhammad T, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Froudarakis E, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: bae ja. bioRxiv [Preprint]. 2023 Mar 30:2023.03.13.531369. doi: 10.1101/2023.03.13.531369. bioRxiv. 2023. PMID: 36993398 Free PMC article. Preprint.
Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types.
Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor A, Brittain D, Buchanan J, Bumbarger D, Kapner D, Kinn S, Mahalingam G, Seshamani S, Takeno M, Torres R, Yin W, Nicovich PR, Bae JA, Castro MA, Dorkenwald S, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J, Yu S, Berg J, Jarsky T, Lee B, Seung HS, Zeng H, Reid RC, Collman F, da Costa NM, Sorensen SA. Gamlin CR, et al. Among authors: bae ja. bioRxiv [Preprint]. 2023 Mar 24:2023.03.22.533857. doi: 10.1101/2023.03.22.533857. bioRxiv. 2023. PMID: 36993629 Free PMC article. Preprint.
Neuronal wiring diagram of an adult brain.
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, Kuehner K, Ogedengbe O, Morey R, Gager J, Kruk K, Perlman E, Yang R, Deutsch D, Bland D, Sorek M, Lu R, Macrina T, Lee K, Bae JA, Mu S, Nehoran B, Mitchell E, Popovych S, Wu J, Jia Z, Castro M, Kemnitz N, Ih D, Bates AS, Eckstein N, Funke J, Collman F, Bock DD, Jefferis GSXE, Seung HS, Murthy M; FlyWire Consortium. Dorkenwald S, et al. Among authors: bae ja. bioRxiv [Preprint]. 2023 Jul 11:2023.06.27.546656. doi: 10.1101/2023.06.27.546656. bioRxiv. 2023. PMID: 37425937 Free PMC article. Preprint.
131 results