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The Norway spruce genome sequence and conifer genome evolution.
Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. Nystedt B, et al. Among authors: arvestad l. Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22. Nature. 2013. PMID: 23698360 Free article.
BESST--efficient scaffolding of large fragmented assemblies.
Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L. Sahlin K, et al. Among authors: arvestad l. BMC Bioinformatics. 2014 Aug 15;15(1):281. doi: 10.1186/1471-2105-15-281. BMC Bioinformatics. 2014. PMID: 25128196 Free PMC article.
Improved gap size estimation for scaffolding algorithms.
Sahlin K, Street N, Lundeberg J, Arvestad L. Sahlin K, et al. Among authors: arvestad l. Bioinformatics. 2012 Sep 1;28(17):2215-22. doi: 10.1093/bioinformatics/bts441. Bioinformatics. 2012. PMID: 22923455
Classification of DNA sequences using Bloom filters.
Stranneheim H, Käller M, Allander T, Andersson B, Arvestad L, Lundeberg J. Stranneheim H, et al. Among authors: arvestad l. Bioinformatics. 2010 Jul 1;26(13):1595-600. doi: 10.1093/bioinformatics/btq230. Epub 2010 May 13. Bioinformatics. 2010. PMID: 20472541 Free PMC article.
GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A. Vicedomini R, et al. Among authors: arvestad l. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S6. doi: 10.1186/1471-2105-14-S7-S6. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815503 Free PMC article.
38 results