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Updates on metaQuantome Software for Quantitative Metaproteomics.
Mehta S, Kumar P, Crane M, Johnson JE, Sajulga R, Nguyen DDA, McGowan T, Arntzen MØ, Griffin TJ, Jagtap PD. Mehta S, et al. Among authors: arntzen mo. J Proteome Res. 2021 Apr 2;20(4):2130-2137. doi: 10.1021/acs.jproteome.0c00960. Epub 2021 Mar 8. J Proteome Res. 2021. PMID: 33683127
Metaproteomics: Sample Preparation and Methodological Considerations.
Kunath BJ, Minniti G, Skaugen M, Hagen LH, Vaaje-Kolstad G, Eijsink VGH, Pope PB, Arntzen MØ. Kunath BJ, et al. Among authors: arntzen mo. Adv Exp Med Biol. 2019;1073:187-215. doi: 10.1007/978-3-030-12298-0_8. Adv Exp Med Biol. 2019. PMID: 31236844 Review.
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: arntzen mo. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.
Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, Wilmes P, Hettich RL, Armengaud J. Van Den Bossche T, et al. Among authors: arntzen mo. Microbiome. 2021 Dec 20;9(1):243. doi: 10.1186/s40168-021-01176-w. Microbiome. 2021. PMID: 34930457 Free PMC article.
Integrative meta-omics in Galaxy and beyond.
Schiml VC, Delogu F, Kumar P, Kunath B, Batut B, Mehta S, Johnson JE, Grüning B, Pope PB, Jagtap PD, Griffin TJ, Arntzen MØ. Schiml VC, et al. Among authors: arntzen mo. Environ Microbiome. 2023 Jul 7;18(1):56. doi: 10.1186/s40793-023-00514-9. Environ Microbiome. 2023. PMID: 37420292 Free PMC article.
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