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ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.
Borovec J, Kybic J, Arganda-Carreras I, Sorokin DV, Bueno G, Khvostikov AV, Bakas S, Chang EI, Heldmann S, Kartasalo K, Latonen L, Lotz J, Noga M, Pati S, Punithakumar K, Ruusuvuori P, Skalski A, Tahmasebi N, Valkonen M, Venet L, Wang Y, Weiss N, Wodzinski M, Xiang Y, Xu Y, Yan Y, Yushkevich P, Zhao S, Munoz-Barrutia A. Borovec J, et al. IEEE Trans Med Imaging. 2020 Oct;39(10):3042-3052. doi: 10.1109/TMI.2020.2986331. Epub 2020 Apr 7. IEEE Trans Med Imaging. 2020. PMID: 32275587 Free PMC article.
Non-rigid consistent registration of 2D image sequences.
Arganda-Carreras I, Sorzano CO, Thévenaz P, Muñoz-Barrutia A, Kybic J, Marabini R, Carazo JM, Ortiz-de Solorzano C. Arganda-Carreras I, et al. Phys Med Biol. 2010 Oct 21;55(20):6215-42. doi: 10.1088/0031-9155/55/20/012. Epub 2010 Sep 30. Phys Med Biol. 2010. PMID: 20885021
Deep learning based domain adaptation for mitochondria segmentation on EM volumes.
Franco-Barranco D, Pastor-Tronch J, González-Marfil A, Muñoz-Barrutia A, Arganda-Carreras I. Franco-Barranco D, et al. Among authors: arganda carreras i. Comput Methods Programs Biomed. 2022 Jul;222:106949. doi: 10.1016/j.cmpb.2022.106949. Epub 2022 Jun 14. Comput Methods Programs Biomed. 2022. PMID: 35753105 Free article.
Automatic registration of serial mammary gland sections.
Arganda-Carreras I, Fernandez-Gonzalez R, Ortiz-de-Solorzano C. Arganda-Carreras I, et al. Conf Proc IEEE Eng Med Biol Soc. 2004;2004:1691-4. doi: 10.1109/IEMBS.2004.1403509. Conf Proc IEEE Eng Med Biol Soc. 2004. PMID: 17272029
MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images.
Wei D, Lin Z, Franco-Barranco D, Wendt N, Liu X, Yin W, Huang X, Gupta A, Jang WD, Wang X, Arganda-Carreras I, Lichtman JW, Pfister H. Wei D, et al. Med Image Comput Comput Assist Interv. 2020 Oct;12265:66-76. doi: 10.1007/978-3-030-59722-1_7. Epub 2020 Sep 29. Med Image Comput Comput Assist Interv. 2020. PMID: 33283212 Free PMC article.
A quantitative biophysical principle to explain the 3D cellular connectivity in curved epithelia.
Gómez-Gálvez P, Vicente-Munuera P, Anbari S, Tagua A, Gordillo-Vázquez C, Andrés-San Román JA, Franco-Barranco D, Palacios AM, Velasco A, Capitán-Agudo C, Grima C, Annese V, Arganda-Carreras I, Robles R, Márquez A, Buceta J, Escudero LM. Gómez-Gálvez P, et al. Among authors: arganda carreras i. Cell Syst. 2022 Aug 17;13(8):631-643.e8. doi: 10.1016/j.cels.2022.06.003. Epub 2022 Jul 13. Cell Syst. 2022. PMID: 35835108 Free article.
38 results